Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0852
(254 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 2.4
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 20 4.1
EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate isome... 20 5.5
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 20 5.5
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 19 7.2
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.0 bits (42), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 113 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCF-PSHGA 226
PV TM+ S +D T+ S R+C P +G+
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKCMSPINGS 598
Score = 20.2 bits (40), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 13 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 108
PV TM+ S +D T+ S R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591
Score = 20.2 bits (40), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 33 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 128
PV TM+ S +D T+ S R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591
Score = 20.2 bits (40), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 53 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 148
PV TM+ S +D T+ S R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591
Score = 20.2 bits (40), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 73 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 168
PV TM+ S +D T+ S R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591
Score = 20.2 bits (40), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 93 PVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRC 188
PV TM+ S +D T+ S R+C
Sbjct: 560 PVATMYGSDEEIINSSNDEGGKTSPNSAVRKC 591
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 210 KHRRDWENIVVTGKTSS*LGKHRR 139
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 190 KHRRDWENIVVTGKTSS*LGKHRR 119
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 170 KHRRDWENIVVTGKTSS*LGKHRR 99
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 150 KHRRDWENIVVTGKTSS*LGKHRR 79
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -2
Query: 130 KHRRDWENIVVTGKTSS*LGKHRR 59
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 110 KHRRDWENIVVTGKTSS*LGKHRR 39
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
Score = 20.2 bits (40), Expect = 4.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 90 KHRRDWENIVVTGKTSS*LGKHRR 19
K +R W + +T+S G HR+
Sbjct: 42 KRKRSWSRPRESAQTTSKAGIHRK 65
>EF493864-1|ABP65286.1| 247|Apis mellifera triosephoshpate
isomerase protein.
Length = 247
Score = 19.8 bits (39), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 235 GKTCAVTGKTSS*LGKHRRDWENIVV 158
GKT V + + + W+N+VV
Sbjct: 136 GKTDEVVFRQTKAIANKINSWDNVVV 161
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +3
Query: 3 RCFPSHDDVFPVTTM 47
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +2
Query: 23 RCFPSHDDVFPVTTM 67
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 43 RCFPSHDDVFPVTTM 87
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +3
Query: 63 RCFPSHDDVFPVTTM 107
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +2
Query: 83 RCFPSHDDVFPVTTM 127
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 103 RCFPSHDDVFPVTTM 147
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +3
Query: 123 RCFPSHDDVFPVTTM 167
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.8 bits (39), Expect = 5.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +2
Query: 143 RCFPSHDDVFPVTTM 187
RC+P +DD T +
Sbjct: 459 RCYPRYDDATNATVI 473
Score = 19.4 bits (38), Expect = 7.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +1
Query: 163 RCFPSHDDVFPVT 201
RC+P +DD T
Sbjct: 459 RCYPRYDDATNAT 471
Score = 19.4 bits (38), Expect = 7.2
Identities = 6/13 (46%), Positives = 8/13 (61%)
Frame = +3
Query: 183 RCFPSHDDVFPVT 221
RC+P +DD T
Sbjct: 459 RCYPRYDDATNAT 471
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -3
Query: 210 KHRRDWENIVVTGKTSS*LGKHRR 139
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -2
Query: 190 KHRRDWENIVVTGKTSS*LGKHRR 119
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 170 KHRRDWENIVVTGKTSS*LGKHRR 99
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -3
Query: 150 KHRRDWENIVVTGKTSS*LGKHRR 79
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -2
Query: 130 KHRRDWENIVVTGKTSS*LGKHRR 59
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -1
Query: 110 KHRRDWENIVVTGKTSS*LGKHRR 39
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Score = 19.4 bits (38), Expect = 7.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -3
Query: 90 KHRRDWENIVVTGKTSS*LGKHRR 19
K +R W +T+S G HR+
Sbjct: 163 KRKRSWSRPREPAQTTSKAGIHRK 186
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,498
Number of Sequences: 438
Number of extensions: 2247
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used: 4511484
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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