Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0852
         (254 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01890.1 68418.m00108 leucine-rich repeat transmembrane prote...    27   1.7  
At1g63370.1 68414.m07164 flavin-containing monooxygenase family ...    27   1.7  
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    26   4.0  
At1g48910.1 68414.m05479 flavin-containing monooxygenase family ...    25   6.9  
At1g59600.1 68414.m06703 expressed protein similar to B-lymphocy...    25   9.2  

>At5g01890.1 68418.m00108 leucine-rich repeat transmembrane protein
           kinase, putative leucine-rich receptor-like protein
           (LRPKm1) - Malus domestica, EMBL:AF053127
          Length = 967

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +2

Query: 47  VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHGA 226
           V  VT +   +R     HD    +     ++  C PS D  F    MFS     F + GA
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFSGEVDVFDTTGA 683



 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +1

Query: 7   VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 153
           V  VT +   +R     HD    +     ++  C PS D  F    MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672



 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 27  VFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFS 173
           V  VT +   +R     HD    +     ++  C PS D  F    MFS
Sbjct: 624 VVAVTLLNVHARSSVSRHDAAAALALSVGETFSCSPSKDQEFGKLVMFS 672


>At1g63370.1 68414.m07164 flavin-containing monooxygenase family
           protein / FMO family protein similar to FMO5 from Cavia
           porcellus [SP|P49109]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 450

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 17  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 136
           +R C    D  F V +  S+ RR FPSH +V      F++
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 37  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 156
           +R C    D  F V +  S+ RR FPSH +V      F++
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 57  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 176
           +R C    D  F V +  S+ RR FPSH +V      F++
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 77  SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQ 196
           +R C    D  F V +  S+ RR FPSH +V      F++
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHGEVLAYLKDFAK 121



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 SRRCFPSHDDVFPVTTMFSQSRRCFPSHG 223
           +R C    D  F V +  S+ RR FPSHG
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHG 110



 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 117 SRRCFPSHDDVFPVTTMFSQSRRCFPSHDDV 209
           +R C    D  F V +  S+ RR FPSH +V
Sbjct: 82  TRECTGYRDFPFVVRSGVSRDRRRFPSHGEV 112


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 9   FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 146
           F   D+  P+++ +   R+  PS D VF       +    FPSH D
Sbjct: 4   FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49



 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 29  FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 166
           F   D+  P+++ +   R+  PS D VF       +    FPSH D
Sbjct: 4   FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49



 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 49  FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 186
           F   D+  P+++ +   R+  PS D VF       +    FPSH D
Sbjct: 4   FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49



 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 69  FPSHDDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 206
           F   D+  P+++ +   R+  PS D VF       +    FPSH D
Sbjct: 4   FRFKDEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49



 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 1   DDVFPVTTMFSQSRRCFPSHDDVFPVTTMFSQSRRCFPSHDD 126
           D+  P+++ +   R+  PS D VF       +    FPSH D
Sbjct: 8   DEGKPLSSEYGYGRKARPSLDRVFKNVKWGFKKPLSFPSHKD 49


>At1g48910.1 68414.m05479 flavin-containing monooxygenase family
           protein / FMO family protein similar to flavin
           monoxygenase-like protein floozy [Petunia x hybrida]
           GI:15010541
          Length = 383

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 244 VVTGKTCAVTGKTSS*LGKHRRDWENIV-VTGKTSS*LGKHRRDWENIV-VTGKTSS*LG 71
           V+ G   ++ GKT +    H++D++ IV  TG  SS +     D+E ++   G   + + 
Sbjct: 282 VINGGIGSINGKTLTFENGHKQDFDAIVFATGYKSS-VCNWLEDYEYVMKKDGFPKAPMP 340

Query: 70  KHRRDWENIVVTG 32
           KH +  +N+   G
Sbjct: 341 KHWKGEKNLYCAG 353


>At1g59600.1 68414.m06703 expressed protein similar to B-lymphocyte
           antigen precursor (B-lymphocyte surface antigen) (721P)
           (Protein XE7) (Swiss-Prot:Q02040) [Homo sapiens];
           supporting cDNA gi|6520226|dbj|AB028230.1|
          Length = 324

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 239 DWENMRRDWENIVVTGKTSS*LGKHRRDWENIVVTGKTSS*LGKHR-RDWENIVVTGKTS 63
           D+E +++DWE     G +     + RR+ + I++ G  S    + R     +++VT    
Sbjct: 157 DFEKLKKDWEEFYAFGHSR----EGRREADTIILRGVPSRWFAEPRVSSKPSMLVTHTIF 212

Query: 62  S*LGKHR 42
           S  GK R
Sbjct: 213 SSFGKIR 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,637,161
Number of Sequences: 28952
Number of extensions: 129910
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 63
effective length of database: 10,246,584
effective search space used: 215178264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)