Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0840
         (1002 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           26   1.5  
AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding pr...    25   3.6  
AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding pr...    24   6.2  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   6.2  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 614  PTNELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSSMSTA 495
            P+N L DT  E+     T    +   +FE T T S  ST+
Sbjct: 1312 PSNCLLDTTHETYNTTATSCERIAGETFECTSTSSKFSTS 1351


>AJ618922-1|CAF02001.1|  272|Anopheles gambiae odorant-binding
           protein OBPjj5a protein.
          Length = 272

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 408 SFELPESNIDCDTXSRSAFSLSNT 337
           +F LP+SN +C T +R   S  NT
Sbjct: 142 NFHLPKSNRNCRTAARRNHSSRNT 165


>AY330177-1|AAQ16283.1|  166|Anopheles gambiae odorant-binding
           protein AgamOBP50 protein.
          Length = 166

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/33 (30%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -3

Query: 628 PFCLLLRMSCLTPRVKASK--ACSRV*PFLEIP 536
           PF ++ +++CL+P +++ K  +C ++  FL +P
Sbjct: 6   PFSVVGKLTCLSPFLQSIKVASCCQLEAFLTLP 38


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 281 RWYVCQYHHFVDQV 240
           RW +CQ  HF DQV
Sbjct: 30  RWSLCQKLHFRDQV 43


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,055,435
Number of Sequences: 2352
Number of extensions: 21200
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 110174532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)