Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0840
(1002 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 99 3e-26
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 116 3e-26
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 116 3e-26
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 99 4e-21
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 74 1e-13
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 67 2e-11
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 67 2e-11
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 58 1e-08
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 52 5e-07
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 52 5e-07
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 52 5e-07
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 51 1e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 51 1e-06
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 31 0.98
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 1.3
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 1.3
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 31 1.3
Z81562-4|CAB04556.1| 360|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 3.9
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 3.9
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 29 5.2
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 29 5.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 6.9
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 6.9
AF026213-9|AAB71302.2| 615|Caenorhabditis elegans Protein kinas... 29 6.9
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 28 9.1
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 9.1
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 28 9.1
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 99.1 bits (236), Expect(2) = 3e-26
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Score = 81.4 bits (192), Expect = 9e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 257 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 32 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 254
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30
Score = 39.9 bits (89), Expect = 0.003
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +2
Query: 680 KVSSYIKKIGYNPAAVAFVPIFWMARRHMLGAFNQNALGSRGGQVXRKGRAKLDGKNXL 856
+VS +IKKIGYNP AV FVPI +ML + N +G V RK GK L
Sbjct: 139 EVSGFIKKIGYNPKAVPFVPISGFNGDNML-EVSSNMPWFKGWAVERK-EGNASGKTLL 195
Score = 37.9 bits (84), Expect(2) = 3e-26
Identities = 16/21 (76%), Positives = 17/21 (80%)
Frame = +1
Query: 619 NKMDSTEPPYSEPRFEEIKKE 681
NKMDSTEPP+SE RF EI E
Sbjct: 119 NKMDSTEPPFSEARFTEITNE 139
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 116 bits (278), Expect = 3e-26
Identities = 59/104 (56%), Positives = 66/104 (63%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIELPVPVNSKLVSLR 549
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ + +
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 550 TVKXXXXXXXXXXXXXXXXXXXXNKMDSTEPPYSEPRFEEIKKE 681
+ NKMDSTEPP+SE RF EI E
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Score = 81.4 bits (192), Expect = 9e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 257 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 32 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 71.3 bits (167), Expect = 1e-12
Identities = 43/98 (43%), Positives = 53/98 (54%)
Frame = +3
Query: 510 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIRRSKQNGFH*TTIQ*AQI*GNQEGKYP 689
A GTGEFEAGISKNGQTREHALLA TLGVKQLI + A+ +
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARF-TEITNEVS 175
Query: 690 HTSRRLATTQLLSLSCPFSGWHGDTCWEPSTKMPWVQG 803
+++ P SG++GD E S+ MPW +G
Sbjct: 176 GFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 254
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30
Score = 39.9 bits (89), Expect = 0.003
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +2
Query: 680 KVSSYIKKIGYNPAAVAFVPIFWMARRHMLGAFNQNALGSRGGQVXRKGRAKLDGKNXL 856
+VS +IKKIGYNP AV FVPI +ML + N +G V RK GK L
Sbjct: 173 EVSGFIKKIGYNPKAVPFVPISGFNGDNML-EVSSNMPWFKGWAVERK-EGNASGKTLL 229
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 116 bits (278), Expect = 3e-26
Identities = 59/104 (56%), Positives = 66/104 (63%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIELPVPVNSKLVSLR 549
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+ + +
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISK 129
Query: 550 TVKXXXXXXXXXXXXXXXXXXXXNKMDSTEPPYSEPRFEEIKKE 681
+ NKMDSTEPP+SE RF EI E
Sbjct: 130 NGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNE 173
Score = 81.4 bits (192), Expect = 9e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 257 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 32 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 71.3 bits (167), Expect = 1e-12
Identities = 43/98 (43%), Positives = 53/98 (54%)
Frame = +3
Query: 510 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLIRRSKQNGFH*TTIQ*AQI*GNQEGKYP 689
A GTGEFEAGISKNGQTREHALLA TLGVKQLI + A+ +
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARF-TEITNEVS 175
Query: 690 HTSRRLATTQLLSLSCPFSGWHGDTCWEPSTKMPWVQG 803
+++ P SG++GD E S+ MPW +G
Sbjct: 176 GFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKG 213
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 254
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30
Score = 39.9 bits (89), Expect = 0.003
Identities = 26/59 (44%), Positives = 31/59 (52%)
Frame = +2
Query: 680 KVSSYIKKIGYNPAAVAFVPIFWMARRHMLGAFNQNALGSRGGQVXRKGRAKLDGKNXL 856
+VS +IKKIGYNP AV FVPI +ML + N +G V RK GK L
Sbjct: 173 EVSGFIKKIGYNPKAVPFVPISGFNGDNML-EVSSNMPWFKGWAVERK-EGNASGKTLL 229
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 99.1 bits (236), Expect = 4e-21
Identities = 43/46 (93%), Positives = 46/46 (100%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+
Sbjct: 70 GITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLV 115
Score = 81.4 bits (192), Expect = 9e-16
Identities = 37/37 (100%), Positives = 37/37 (100%)
Frame = +2
Query: 257 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE
Sbjct: 32 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 68
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 254
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30
Score = 64.1 bits (149), Expect = 1e-10
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +3
Query: 510 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 608
A GTGEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 117 ACGTGEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 74.1 bits (174), Expect = 1e-13
Identities = 33/36 (91%), Positives = 34/36 (94%)
Frame = +2
Query: 257 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 364
GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK +
Sbjct: 32 GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKVTK 67
Score = 65.3 bits (152), Expect = 6e-11
Identities = 29/30 (96%), Positives = 29/30 (96%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYK 254
MGKEK HINIVVIGHVDSGKSTTTGHLIYK
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYK 30
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+
Sbjct: 233 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILV 278
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 263 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
+D RTI+KF+ EA GK SF YAWVLD+ + ERE
Sbjct: 197 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 231
Score = 44.8 bits (101), Expect = 1e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +3
Query: 513 AGTGEFEAGISKNGQTREHALLAFTLGVKQLI 608
A TGEFE G GQT+EHALL +LGV QLI
Sbjct: 281 ATTGEFETGFENGGQTKEHALLLRSLGVTQLI 312
Score = 41.5 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 174 EKTHINIVVIGHVDSGKSTTTGHLIYKVVVL 266
+K IN++V+GHVD+GKST GHL++ + V+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVV 197
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 66.9 bits (156), Expect = 2e-11
Identities = 28/46 (60%), Positives = 36/46 (78%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
G+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+
Sbjct: 251 GVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILV 296
Score = 49.6 bits (113), Expect = 3e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 263 IDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
+D RTI+KF+ EA GK SF YAWVLD+ + ERE
Sbjct: 215 VDSRTIDKFKHEAARNGKASFAYAWVLDETEEERE 249
Score = 44.8 bits (101), Expect = 1e-04
Identities = 21/32 (65%), Positives = 23/32 (71%)
Frame = +3
Query: 513 AGTGEFEAGISKNGQTREHALLAFTLGVKQLI 608
A TGEFE G GQT+EHALL +LGV QLI
Sbjct: 299 ATTGEFETGFENGGQTKEHALLLRSLGVTQLI 330
Score = 41.5 bits (93), Expect = 0.001
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 174 EKTHINIVVIGHVDSGKSTTTGHLIYKVVVL 266
+K IN++V+GHVD+GKST GHL++ + V+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVV 215
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 58.0 bits (134), Expect = 1e-08
Identities = 41/136 (30%), Positives = 60/136 (44%)
Frame = +1
Query: 268 QTYHREVREGGPGNG*RILQICLGIGQTKG*A*XGITIDIALWKFETSKYYVTIIDAPGH 447
+ Y RE +E G + L C+ + G T+++ FET K + TI+DAPGH
Sbjct: 142 EKYEREAKEKGRESW--YLSWCMDTNDEE--REKGKTVEVGRAYFETEKRHFTILDAPGH 197
Query: 448 RDFIKNMITGTSQADCAVLIELPVPVNSKLVSLRTVKXXXXXXXXXXXXXXXXXXXXNKM 627
+ F+ NMI G +QAD AVL+ + R + NKM
Sbjct: 198 KSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKM 257
Query: 628 DSTEPPYSEPRFEEIK 675
D + E RF+EI+
Sbjct: 258 DDPTVKWEEERFKEIE 273
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +2
Query: 254 SGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
+G +DKRT+EK+E+EA+E G+ S+ +W +D ERE
Sbjct: 133 TGMVDKRTLEKYEREAKEKGRESWYLSWCMDTNDEERE 170
Score = 42.7 bits (96), Expect = 4e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +3
Query: 510 AAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 608
+A GEFE G + GQTREH++L T GVK L+
Sbjct: 219 SARRGEFETGFDRGGQTREHSMLVKTAGVKHLV 251
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 97 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 142
Score = 33.1 bits (72), Expect = 0.32
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 171 KEKTHINIVVIGHVDSGKSTTT 236
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
Score = 33.1 bits (72), Expect = 0.32
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 171 KEKTHINIVVIGHVDSGKSTTT 236
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/46 (50%), Positives = 33/46 (71%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+
Sbjct: 98 GITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILV 143
Score = 33.1 bits (72), Expect = 0.32
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 171 KEKTHINIVVIGHVDSGKSTTT 236
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 177 KTHINIVVIGHVDSGKSTTT 236
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 51.2 bits (117), Expect = 1e-06
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI++A +E+ + D PGH DFIKNMI GTSQ D AVL+
Sbjct: 93 GITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLV 138
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 177 KTHINIVVIGHVDSGKSTTT 236
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 31.5 bits (68), Expect = 0.98
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 851 HFSRPAWPFPYXPPAHPLNPRH--FG*RLPTCVSVPSRK 741
++ P +P+P PP HP P + +G P+ +PS+K
Sbjct: 20 YYPPPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQK 58
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 31.5 bits (68), Expect = 0.98
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 851 HFSRPAWPFPYXPPAHPLNPRH--FG*RLPTCVSVPSRK 741
++ P +P+P PP HP P + +G P+ +PS+K
Sbjct: 81 YYPPPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQK 119
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 31.5 bits (68), Expect = 0.98
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 851 HFSRPAWPFPYXPPAHPLNPRH--FG*RLPTCVSVPSRK 741
++ P +P+P PP HP P + +G P+ +PS+K
Sbjct: 45 YYPPPMYPYPSAPPPHPNAPMYYPYGHHAPSHAPMPSQK 83
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 31.5 bits (68), Expect = 0.98
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 370 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GIT I + E +K VT +D PGH F G AD VL+
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLV 234
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKVVVL 266
M +++ N+ VI HVD GKST T L+ K ++
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 46
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 165 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKVVVL 266
M +++ N+ VI HVD GKST T L+ K ++
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGII 46
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 31.1 bits (67), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +3
Query: 189 NIVVIGHVDSGKSTTTGHLIY 251
NI VI HVD+GK+T T L+Y
Sbjct: 27 NIGVIAHVDAGKTTVTERLLY 47
>Z81562-4|CAB04556.1| 360|Caenorhabditis elegans Hypothetical
protein K03D7.7 protein.
Length = 360
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = -1
Query: 519 YRQLDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXS 364
YR+L+EH +S + +++E S +ND ++L S SN+ D S
Sbjct: 179 YRELEEHCLVSYQNQAKAIVEENPESMMLNDVAVLLQS-----SNVQLDRFS 225
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 266 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 266 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 367
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 370 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 507
GITI A + + IID PGH DF + D AVL+
Sbjct: 97 GITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLV 142
Score = 28.3 bits (60), Expect = 9.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 189 NIVVIGHVDSGKSTTTGHLIY 251
NI + H+DSGK+T T ++Y
Sbjct: 46 NIGISAHIDSGKTTVTERILY 66
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 649 SEPRFEEIKKESILIHQEDWLQPSCCR 729
S+ F E ++++L+HQE + QP C R
Sbjct: 193 SDDEFSEKDEQAVLMHQEGFDQPPCMR 219
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 649 SEPRFEEIKKESILIHQEDWLQPSCCR 729
S+ F E ++++L+HQE + QP C R
Sbjct: 193 SDDEFSEKDEQAVLMHQEGFDQPPCMR 219
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 186 INIVVIGHVDSGKSTTT 236
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 186 INIVVIGHVDSGKSTTT 236
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF026213-9|AAB71302.2| 615|Caenorhabditis elegans Protein kinase
protein 9, isoform b protein.
Length = 615
Score = 28.7 bits (61), Expect = 6.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Frame = -2
Query: 878 WXRRAFXGGHFSRPAWPFPYXPPAHPLNPRHF 783
W + + G ++ P+P PP HP P ++
Sbjct: 123 WNNQPYQQGSWASQYAPYPTLPPEHPTTPLYY 154
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 159 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKVV 260
P K+ + V+G+VD+GKST G L + +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSAL 165
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 427 IIDAPGHRDFIKNMITGTSQADCAVLI 507
IID PGH F G+S D A+L+
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILV 579
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 159 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKVV 260
P K+ + V+G+VD+GKST G L + +
Sbjct: 132 PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSAL 165
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,845,902
Number of Sequences: 27780
Number of extensions: 472492
Number of successful extensions: 1209
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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