Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0838
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   1.4  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   4.4  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    26   5.8  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    26   5.8  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   7.7  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 188  YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 96
            + RTT    AHLQ  R+L  +A  E+  IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 450 PLPQANLPSGQIGSSVFKIG 391
           P+P+A LPS  IG  VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 288 TEASLVTLFSRPGRT*RHRGSPSVVRRKYSSAGLPS 181
           ++ + ++L   PG T  HR  P +++R  SS G PS
Sbjct: 528 SQPASLSLLGPPGNTPGHRNVPPILKR--SSIGTPS 561


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 480 LQNNSFSMQSPLPQANLPS-GQIGSSVFK 397
           L+ NSF +  P+P  ++PS   I S VFK
Sbjct: 305 LKKNSFCLYLPIPLTSIPSTPSIRSHVFK 333


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 505 IHENACTVELDPNRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQ 648
           I   A     DP++ P+ +P+          A    +  G+ P +VP+
Sbjct: 250 IPPGASMARSDPSQVPESNPSAAAAVAAAAVAAAANLTNGVNPPEVPR 297


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 498 LQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGF 373
           LQ   P+Q+++F+  +P P   +P   I ++   +G ++  F
Sbjct: 276 LQKNHPVQSSNFNPYTPAPSITVPPNYIPNTAM-MGPSYSSF 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,068
Number of Sequences: 5004
Number of extensions: 55007
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)