Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0838
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0621 - 35147070-35148359,35148499-35148579,35148665-351487...    28   6.0  
10_08_1058 + 22608852-22609172,22609257-22610651                       28   7.9  
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982...    28   7.9  
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461...    28   7.9  
01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622     28   7.9  

>03_06_0621 -
           35147070-35148359,35148499-35148579,35148665-35148741,
           35148792-35149298,35149405-35150278
          Length = 942

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +2

Query: 335 DWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKL------ACGSGDCIE 463
           D  +N  N   I      L  +  DEP CP  +L      ACGS +CI+
Sbjct: 216 DLLSNKINASTIGASMAYLSTVIADEPNCPTARLDNKTQFACGSNNCID 264


>10_08_1058 + 22608852-22609172,22609257-22610651
          Length = 571

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 618 WDTCTVSRTETVR*DALVRITVRRSIWVQ--FDSASI--FMDSSLQSGLPLQNNSFSMQS 451
           W+ CTVS  E V+   L RI     IWV     +AS+     + +Q G+ +    F  + 
Sbjct: 320 WEVCTVSEVERVK--VLARIV---PIWVTCVLYAASLGQMTTTFIQQGMAMDTRVFGGRF 374

Query: 450 PLPQANLPSGQI 415
            +P A+L S ++
Sbjct: 375 RVPVASLVSVEV 386


>05_07_0305 -
           29097478-29097598,29097766-29097866,29098136-29098288,
           29098404-29098542,29098649-29098719,29099022-29099333,
           29099605-29099903,29100011-29100271,29100365-29100471,
           29100588-29100739,29100816-29100970,29102946-29103141,
           29103340-29103468,29103540-29103641,29103736-29103889,
           29103970-29104058
          Length = 846

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 511 ENACTVELDPNRAPDCDPNQCVLP 582
           EN   +++DP+    C P+ C+LP
Sbjct: 250 ENELPLKVDPSNCKHCTPSYCLLP 273


>01_06_0850 +
           32444475-32444722,32445159-32445312,32445763-32446160,
           32446476-32446571,32446650-32446722,32446854-32447136,
           32447225-32447556,32447642-32447912,32448502-32448783,
           32449106-32449518
          Length = 849

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 277 PGDAVL*AWSHLTTSRQSFGGETEIFIGGSTVA 179
           PG ++  AWS L      F GE+   I G+++A
Sbjct: 599 PGSSIWGAWSSLGLDSAEFAGESFAIISGTSMA 631


>01_05_0486 - 22637391-22637723,22638016-22638180,22638254-22638622
          Length = 288

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 254 LVAPDDIAAVLRW*DGNIHRRVYRRTTDQRSA 159
           LV P D+ AV+ W    +H R+  R  ++R+A
Sbjct: 15  LVVPHDLCAVVSWATTLVHARLGPRPAERRTA 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,240
Number of Sequences: 37544
Number of extensions: 399654
Number of successful extensions: 1224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)