Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0838
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 58 7e-09
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 40 0.002
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 40 0.002
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 38 0.008
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.017
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 36 0.023
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 36 0.040
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 35 0.053
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 35 0.053
SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6) 35 0.071
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 34 0.093
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 34 0.093
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 33 0.22
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 33 0.28
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 33 0.28
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 33 0.28
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 32 0.50
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 31 0.66
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 31 0.87
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 31 0.87
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 31 1.1
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 31 1.1
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 30 1.5
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 30 1.5
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 30 1.5
SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6) 30 1.5
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013) 30 2.0
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 29 2.7
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 29 3.5
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 28 6.1
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 28 6.1
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 28 8.1
SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 58.0 bits (134), Expect = 7e-09
Identities = 22/45 (48%), Positives = 32/45 (71%)
Frame = +1
Query: 547 APDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVN 681
A C P+ C LP+CFCS G +PGG+ P ++PQM+ +TF+ A+N
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAIN 608
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 541 NRAPDCDPNQCVLPDCFCSADGTRIPGGIEPNQVPQMVTITFNGAVNV 684
N A CD +C P+C CS D + PGG+ P PQ++ ITF+ + V
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSPALTPQIIMITFDDDITV 71
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES-MKMLALSNWT 538
C + AC SG C+ K C+G DC D S L ++WT
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESSLVCASWT 2208
Score = 38.7 bits (86), Expect = 0.004
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 CPGGLAFD-IDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKE 469
CP G+A D +D +TC EK V+P P C GK C +G CI
Sbjct: 799 CPYGMALDQLDNKTC------------EKNFTVIPT-----PPCSAGKFTCKNGHCISLR 841
Query: 470 LFCNGKPDCKDES 508
C+G+ DC D S
Sbjct: 842 WKCDGENDCVDNS 854
Score = 38.3 bits (85), Expect = 0.006
Identities = 30/117 (25%), Positives = 45/117 (38%)
Frame = +2
Query: 158 EPNADQLCDGRPADEYFRLTTEGLPRCRQVRPGLENSVTRLASVRCPGGLAFDIDRQTCD 337
+P Q D R + +G+P C P ++ + SV F D C
Sbjct: 2967 KPGTYQCADNRKCISVLEVC-DGIPSC----PAGDDE-SNCGSVNQCAPYHFRCDNFRCV 3020
Query: 338 WKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
+++ V CD I+ R C + C SG CI ++ C+G DC D S
Sbjct: 3021 YRSRV--CDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGDNDCGDSS 3075
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP K C +G CI K C+G+ DC D S
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMS 76
Score = 34.7 bits (76), Expect = 0.071
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 410 EPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
E CP + C +G C+ + C+G+ DC D S
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFS 2277
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + AC +G CI L C+G DC D S
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNS 2399
Score = 34.3 bits (75), Expect = 0.093
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 419 CPEGKLACGSGD-CIEKELFCNGKPDCKDES 508
CP G+ C +G CI E C+G+ DC+D S
Sbjct: 3086 CPAGQARCATGRRCIPSEWRCDGESDCEDGS 3116
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP C SG CI C+G DC D S
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGS 2525
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C +G+ +C G CI + C+G DC D S
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADAS 3236
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 416 IC-PEGKLACGSGDCIEKELFCNGKPDCKDES 508
IC P+ + C +G CI K+ C+G DC D S
Sbjct: 86 ICDPKLEFQCANGRCINKKWRCDGMKDCADGS 117
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 419 CPEGKLACGSG-DCIEKELFCNGKPDCKDES 508
C + AC +G CI+++ C+G+ DC D S
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRS 1117
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C G +C +G CI + C+ + DC D S
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNS 2238
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C SG+C+ C+G DC D+S
Sbjct: 2328 CNVSEFRCTSGECVPASWRCDGDNDCTDKS 2357
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 398 LKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCKD 502
L+ C G++ CGS + CI C+G DC D
Sbjct: 2280 LRCPPTTCVPGQVKCGSKNLCIPSSWLCDGSDDCGD 2315
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C C +G C ++ C+G DC D S
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGS 939
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C +G CI +E C+ + DC D S
Sbjct: 2457 CDVTQFRCKTGTCITREWRCDHQDDCGDGS 2486
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP K C G CI++ CNGK DC D S
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDAS 33
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 38.7 bits (86), Expect = 0.004
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = +1
Query: 604 GTRIPGGIEPNQVPQMVTITFNGAVNV 684
G +P G++P Q+PQM+ +TF+ A+N+
Sbjct: 1553 GASVPNGLDPKQIPQMIMLTFDDAINM 1579
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 413 PICPEGKLACG-SGDCIEKELFCNGKPDCKDES 508
P C G+ CG G+C+ + L CNG+ DC+D S
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDAS 756
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = +2
Query: 416 ICPEGKLACGSG-----DCIEKELFCNGKPDC 496
+CP G CG+G CI K L CNG DC
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDC 1560
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 404 TDEPICPEG--KLACGSGDCIEKELFCNGKPDCKD 502
+DE C G + C SG+CIE FC+GK DC D
Sbjct: 689 SDESGCTCGLHEFQCSSGECIEVATFCDGKKDCGD 723
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 392 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPD-CKDES 508
P++ C + C +G+C+ K CNG D C D S
Sbjct: 650 PVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGS 689
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C K AC SG+CI+ C+G DCKD S
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDAS 1184
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKD 502
C + + C SG C++ L C+GK DC+D
Sbjct: 1193 CSKDEYQCVSGACVKWPLTCDGKKDCED 1220
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 ENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEG--K 433
E V L + G LA IDR +T C+Q LP+ CP+ +
Sbjct: 1075 EIKVLVLGESQINGTLAIAIDRIIISTET----CEQ-------LPVHSVPGFRCPDKSTQ 1123
Query: 434 LACGSGDCIEKELFCNGKPDCKDES 508
C +G C+ ++L C+G C D S
Sbjct: 1124 FQCVNGQCVSRDLICDGDNACLDFS 1148
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 36.7 bits (81), Expect = 0.017
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C E + C SGDC+ C+G DC D S
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSS 245
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 290 RCPGGLAFDIDRQTCDWKTNVKNCDQ-IEKPRKVLPILKTDEPIC 421
RCP GL + + + CDW V +CD+ P P+ T +P C
Sbjct: 1268 RCPAGLKWSVKKTACDWPRYV-DCDRTTSTPPTPTPLTPTTKPAC 1311
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 290 RCPGGLAFDIDRQTCDWKTNVKNCD-QIEKPRKVLPILKTDEPIC 421
RC GL + I + TCDW NV +CD + P P T +P C
Sbjct: 813 RCSPGLKWSITKTTCDWPRNV-DCDRKTPTPPSPTPPTTTPKPAC 856
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 290 RCPGGLAFDIDRQTCDWKTNVKNCDQ 367
RCP GL + + + TCDW V +CD+
Sbjct: 1023 RCPAGLKWSVKKTTCDWPRYV-DCDR 1047
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 11/79 (13%)
Frame = +2
Query: 290 RCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTD-----EPICPEGK------L 436
RCP GL + + + CDW V +CD+ P K + + + P+G
Sbjct: 1168 RCPAGLKWSVKKTACDWPRYV-DCDRTTSTPPT-PTTKPECDLHCQTLSPDGSCTVAPGY 1225
Query: 437 ACGSGDCIEKELFCNGKPD 493
A +G C++ FC KP+
Sbjct: 1226 AVVNGMCVD-TYFCKEKPN 1243
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 290 RCPGGLAFDIDRQTCDWKTNVKNCDQ 367
RCP GL + + + CDW V +CD+
Sbjct: 918 RCPAGLKWSVKKTACDWPRYV-DCDR 942
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 293 CPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPIL 400
CP GL ++I++ CD NV NC++ E L IL
Sbjct: 1485 CPHGLKWNIEKNACDHPVNV-NCNREEYDVLTLGIL 1519
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 36.3 bits (80), Expect = 0.023
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP C SG+CI C+GK DC D +
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNT 156
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C G+ C +G CI K L+C+G C D S
Sbjct: 91 CGSGEFQCDNGKCIRKNLYCDGDFACVDGS 120
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 35.5 bits (78), Expect = 0.040
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP C SG+CI CN + DC D +
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNA 248
Score = 31.9 bits (69), Expect = 0.50
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C E + C +G C+++ L C+G C D S
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGS 212
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 35.1 bits (77), Expect = 0.053
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C G C+ FCNG+ DC D S
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGS 103
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 437 ACGSGDCIEKELFCNGKPDCKDES 508
AC G C+ L CNG DC+D S
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGS 140
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 35.1 bits (77), Expect = 0.053
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C G C+ FCNG+ DC D S
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGS 103
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 437 ACGSGDCIEKELFCNGKPDCKDES 508
AC G C+ L CNG DC+D S
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGS 140
>SB_35846| Best HMM Match : Baculo_p24 (HMM E-Value=1.6)
Length = 810
Score = 34.7 bits (76), Expect = 0.071
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = +2
Query: 179 CDGRPADEYFRLTTEGLPRCRQVRPGLENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKN 358
C G+ D T G+P+C + NS T G+ I +T ++KN
Sbjct: 49 CSGKTGDS---ATNTGMPKCDEKENQNYNSCT--GDNNRDTGINQSIALRTMTMVNDLKN 103
Query: 359 CDQIEKPRKVLPILKTDEPICPEGK 433
DQ E P + LP+ PI +GK
Sbjct: 104 IDQREDPNQELPLGAFKTPIALQGK 128
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 34.3 bits (75), Expect = 0.093
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDESMKM 517
C + C +G CI+ C+G DC+D S +M
Sbjct: 130 CDPSQHTCNNGQCIKASWLCDGASDCQDNSDEM 162
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +2
Query: 284 SVRC-PGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPILKTDEPI-CPEGKLACGSGD- 454
S RC PG D R C ++ +NC + +P T P+ C + + C G+
Sbjct: 432 SGRCIPGRFRCD-HRSDCLDGSDEQNCQNVTRP--------TPPPVKCRKNERMCADGNG 482
Query: 455 CIEKELFCNGKPDCKDES 508
C+ + C+G+ DC D S
Sbjct: 483 CVHRRWICDGERDCLDGS 500
Score = 32.3 bits (70), Expect = 0.38
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP C + C+ C+G+ DC D S
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRS 372
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 398 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
L T + P C +G C+ KE C+G DC D S
Sbjct: 294 LSTAKTCNPVTDHTCRNGRCVLKEWLCDGMDDCGDSS 330
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 34.3 bits (75), Expect = 0.093
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C G+ C S +CI L C+G DC D S
Sbjct: 23 CDPGQFECTSSECIPDVLKCDGSEDCADSS 52
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 34.3 bits (75), Expect = 0.093
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 392 PILKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
P T P C G+ C +G CI C+ K DC D S
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGS 2579
Score = 33.5 bits (73), Expect = 0.16
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 413 PICPEGKLACGSGDCIEKELFCNGKPDCKD 502
P CP G C G CI + L C+ + DC D
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSD 2273
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 413 PICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
P+C G+ C G CI+ C+ DC D S
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNS 2122
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 428 GKLACGSGDCIEKELFCNGKPDCKDES 508
G + C +G CI+K C+ DC D S
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNS 3233
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C SG CI C+ + DC D S
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGS 2812
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 401 KTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
KT C G+ CG+G CI C+ DC D S
Sbjct: 182 KTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNS 217
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C +G+CI K C+G+ DC ++S
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKS 621
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKD 502
C E ++ CG+G C+ K C+ DC D
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGD 694
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C +G+CI K C+G+ DC ++S
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKS 776
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 416 ICPEGKLACGSG-DCIEKELFCNGKPDCKDES 508
IC +G+ CGS CI + C+G DC + +
Sbjct: 788 ICKDGEFQCGSSKQCIPESKVCDGSVDCTNSA 819
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 RQTCDWKTNVKNCDQIEKPRKVLPILKTDEPICPEGKLACGSGD-CIEKELFCNGKPDCK 499
+ C + KNC + + P P+ +P C + C +G C+++ C+G DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 500 DES 508
D S
Sbjct: 122 DGS 124
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 416 ICPEGKLACG-SGDCIEKELFCNGKPDC 496
+C + + CG S CI K C+GK DC
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDC 69
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C +G CI + C+ + DC D S
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNS 33
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP + C +G CI C+G DC D S
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMS 39
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C G+ +C +G CI + C+ DC D S
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGS 79
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDESMKM 517
C + +C +G C+ L C+G DC D S +M
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEM 135
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = +2
Query: 419 CPEGKLAC---GSGDCIEKELFCNGKPDCKD 502
CP + C SG CI CNG+ DC D
Sbjct: 192 CPADWVRCFYNSSGLCISTSWLCNGRVDCPD 222
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Frame = +2
Query: 416 ICPEGKLACGSG-----DCIEKELFCNGKPDC 496
+CP G CG+G CI K L CNG DC
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDC 37
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C G C +G CI L C+ DC DES
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDES 34
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C + C++++ CN K DC D S
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNS 174
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 407 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
D P C SG CI + C+GK DC D S
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRS 388
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 31.5 bits (68), Expect = 0.66
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 431 KLACGSGDCIEKELFCNGKPDCKDES 508
+L C +G C +K +C+G+ DC D S
Sbjct: 228 QLRCDNGRCEDKRWWCDGQDDCNDGS 253
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +2
Query: 404 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDES 508
+DE CP ++ C S C+ + L C+GKPDC D S
Sbjct: 36 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYS 76
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 419 CPEGKLAC-GSGDCIEKELFCNGKPDCKDES 508
C + + C S CI+ C+G PDC D S
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHS 36
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Frame = +2
Query: 404 TDEPICPEG-----KLACG-SGDCIEKELFCNGKPDCKDES 508
+DE CP ++ C S C+ + L C+GKPDC D S
Sbjct: 1333 SDEDDCPNSDCNLEQIYCPVSQKCLNRTLQCDGKPDCSDYS 1373
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 419 CPEGKLAC-GSGDCIEKELFCNGKPDCKDES 508
C + + C S CI+ C+G PDC D S
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHS 1333
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 419 CPEGKLACGSG-DCIEKELFCNGKPDCKDES 508
C + AC +G CI+++ C+G+ DC D S
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRS 144
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 293 CPGGLAFDIDRQTCDWKTNVK 355
CP GL F+ D CDW VK
Sbjct: 488 CPPGLIFNTDLMVCDWSHEVK 508
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C C SG+CI +L C+ DC D S
Sbjct: 704 CTPESYKCRSGECISLDLLCDFNKDCLDGS 733
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 398 LKTDEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
L + E C K C + CI+ CN + DC+D S
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGS 421
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 407 DEPICPEGKLACGSGDCIEKELFCNGKPDCKDES 508
D P C E + C +G CI+ + C+ +C D S
Sbjct: 1342 DCPPCKENQFRCDNGQCIDGDPRCDKYKNCTDGS 1375
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 293 CPGGLAFDIDRQTCDWKTNVKNCD 364
CP GL + + + TCDW V +CD
Sbjct: 146 CPSGLKWSVTKTTCDWPRYV-DCD 168
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 293 CPGGLAFDIDRQTCDWKTNVKNCD 364
CP GL + + + TCDW V +CD
Sbjct: 53 CPSGLKWSVTKTTCDWPRYV-DCD 75
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 413 PICPEGKLACGS-GDCIEKELFCNGKPDCKD 502
P C G+ C S G CI + C+G DC+D
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQD 239
>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
Length = 551
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -3
Query: 179 TTDQRSAHLQLRRHLVASHE-KYCIPANQLITHRDTETRVEPWRSAKTG 36
T+ + HL+ +R L+ + E K + + L+T TE +E WR ++ G
Sbjct: 391 TSGRVGQHLKTKRGLITTPELKDLLDSGDLVTATATEKPIEEWRPSELG 439
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 534 QFDSASIFMDSSLQSGLP--LQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTF 382
+FD ++ D + P L +F + SP P+ N+P ++ S+V +I + F
Sbjct: 1393 RFDIGCVYRDKRILGAHPKELYECAFDIISPTPEGNVPDAEVISAVAEIIREF 1445
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 293 CPGGLAFDIDRQTCDWKTNV 352
CPGGL ++ + CDW NV
Sbjct: 107 CPGGLLYNEKTKQCDWPRNV 126
>SB_4762| Best HMM Match : tRNA-synt_1b (HMM E-Value=0.00013)
Length = 396
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 137 DDDGAGDEPNADQLCDGRPADEYFRLTTEGLPRCRQVRPGL 259
DD G + D DG D YFRLT + PR +P L
Sbjct: 216 DDGGDNGHDDDDDHDDGVMLDPYFRLTRDVAPRIGCPKPSL 256
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 278 LASVRCPGGLAFDIDRQTCDWKTNVKNC 361
+A+ CP GLAF+ CD+ +NV C
Sbjct: 342 IANRHCPTGLAFNEAIGMCDYPSNVPGC 369
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 416 ICPEGKLACGSGDCIEKELFCNGKPDCKD 502
+C + K C +G C+ + C+G DC+D
Sbjct: 98 VCSQFK--CNNGHCVHRNWKCDGSNDCRD 124
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + C +G+CI + C+ DC D S
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGS 163
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCK 499
C +L C SG C++ C+G DC+
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCE 271
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDE 505
C +L C SG C+ C+G DC+ +
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQD 295
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
CP + C + C+ + C+G DC D S
Sbjct: 21 CPRHEFECENKLCVPRTWLCDGDNDCHDGS 50
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCKDES 508
C + CG+ CI + C+G DC D S
Sbjct: 65 CGIEEFDCGNSTCIPLTVLCDGLYDCADRS 94
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 422 PEGKLACGSGDCIEKELFCNGKPDCKDESMKM 517
P+ C +G CI C+ + DC D S +M
Sbjct: 8 PDTSFKCDNGRCISATWVCDTENDCGDNSDEM 39
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCK 499
C +L C SG C+ C+G DC+
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCE 337
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCK 499
C +L C SG C+ C+G DC+
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCE 1166
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 419 CPEGKLACGSGDCIEKELFCNGKPDCK 499
C +L C SG C+ C+G DC+
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCE 256
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 257 LENSVTRLASVRCPGGLAFDIDRQTCDWKTNVK--NCDQIEK 376
L+N + L S R G F+ID + WK + N D++EK
Sbjct: 1670 LKNQIAALYSSRQNGTKTFEIDNTSFGWKAIIDQYNRDRVEK 1711
>SB_326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -1
Query: 514 FHGFIFAVWFTITEQFFFNAISAATSQFTFRTNRFVRFQDW*NFSWLFYLIAIL 353
+HG++ W AA S F+F R F+ W F W+ +++AI+
Sbjct: 164 WHGYVSREWDW--SGILLTGAFAALSIFSFWPIRRRLFEWWLRFHWVLFILAIV 215
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,488,950
Number of Sequences: 59808
Number of extensions: 470224
Number of successful extensions: 1579
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 1350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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