Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0838
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -3

Query: 170 QRSAHLQLRRHLVASHEKYCIPANQLITHRD------TETRVEPWRSAKTGCCLA 24
           ++S H +  +   A+     I  +Q + H+D      T T+    R   TGCC+A
Sbjct: 778 EKSEHCEKGKEYYAASFHTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQNTGCCIA 832


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 137 DDDGAGDEPNADQLCDGRPAD 199
           DDDG  D+ +  +  +G+PA+
Sbjct: 394 DDDGDDDDDDDVEAANGKPAE 414


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 458 IEKELFCNGKPDCKDESM 511
           +  E+FC     CKD++M
Sbjct: 158 VANEMFCETTIGCKDKNM 175


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 341 KTNVKNCDQIEKPRKVL 391
           ++NV+ C+Q+EK    L
Sbjct: 802 RSNVQQCEQLEKAPNTL 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,144
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)