Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0838
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51560.1 68418.m06393 leucine-rich repeat transmembrane prote...    29   2.9  
At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    28   5.0  
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ...    27   8.8  
At3g56370.1 68416.m06269 leucine-rich repeat transmembrane prote...    27   8.8  

>At5g51560.1 68418.m06393 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 680

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 218 TEGLPRCRQVRPGLENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKN 358
           T+ L    +V+  L+     LAS    G L  D +   CDWK  V N
Sbjct: 29  TDELATLMEVKTELDPEDKHLASWSVNGDLCKDFEGVGCDWKGRVSN 75


>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/53 (41%), Positives = 26/53 (49%)
 Frame = -2

Query: 528 DSASIFMDSSLQSGLPLQNNSFSMQSPLPQANLPSGQIGSSVFKIGKTFRGFS 370
           +S+S   DSSL       NNS S  SPLP +  P  +I SS    G  F G S
Sbjct: 13  NSSSPSSDSSLNPSSEHGNNSSSSLSPLPSS--PPSRISSST---GTRFSGHS 60


>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 856

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 277 PGDAVL*AWSHLTTSRQSFGGETEIFIGGSTVA 179
           PG+++  AWS   T    F GE+   + G+++A
Sbjct: 604 PGNSIWGAWSSAATESTEFEGESFAMMSGTSMA 636


>At3g56370.1 68416.m06269 leucine-rich repeat transmembrane protein
            kinase, putative leucine-rich receptor-like protein
            kinase - Malus domestica, EMBL:AF053127
          Length = 964

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +2

Query: 125  VKRQDDDGAGDEPNADQLCDGRPADEYFRLTTEGLPRCRQV---RPGLENSVTRLASVRC 295
            V+   +DG  DE    +L    P +E   +   GL    QV   RP +  +V  L  +RC
Sbjct: 894  VREALEDGRADECIDPRLQGKFPVEEAVAVIKLGLICTSQVPSSRPHMGEAVNILRMIRC 953

Query: 296  PGG 304
            P G
Sbjct: 954  PSG 956


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,427
Number of Sequences: 28952
Number of extensions: 306077
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)