Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0837
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   162   5e-41
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    28   1.5  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.5  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   2.0  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    27   3.4  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   6.0  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   7.9  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   7.9  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   7.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  162 bits (393), Expect = 5e-41
 Identities = 75/147 (51%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
 Frame = +3

Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVK 434
           AKG+GAFG FE T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+K
Sbjct: 61  AKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALK 120

Query: 435 FYTDDGVWDLVGNNTPIFFIRDPTFSRVLSILRRETLQHI*KIQTCFGTF*P*DQRTIHQ 614
           FYTD+G++D+VGNNTP+FF+RDP    +    ++   Q+  K  T F  +   +  +IHQ
Sbjct: 121 FYTDEGIFDMVGNNTPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQ 180

Query: 615 LLYLFGD-RGIPDGYRHMNGYGSHTFQ 692
           ++ LF D  G P  YR M+G+ SHT++
Sbjct: 181 VMILFSDLGGTPYSYRFMDGFSSHTYK 207



 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = +1

Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVV
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVV 59


>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 544 RVSLLSMDKTRENVGSLIKKMGVLFPTKSHTPSSV*NFTAKPRGSRTVS-ADPLSPP 377
           + + LS  K  EN+ S+    G    + ++TPSSV    +KP  S T +  DP +PP
Sbjct: 12  KANTLSESKVSENLMSINSDSGT---SNANTPSSV-TSNSKPVASSTAAKKDPNAPP 64


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 689 ECMGTISIHMSVAIRNTTVSKQVKKLMDGSLVLRSKSPKTCLDLSDVLQGFSSE 528
           E  GT+    S   +NT + + +K+    S +L+S++ K C+D   +   F  +
Sbjct: 661 EVQGTLEEATSYYQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEED 714


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 429 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 304
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = +2

Query: 479 SHFLYKRSNIFPSFIHTQKRNPATHLK---DPDMFWDFLTLRPENHPSTSLLVW 631
           +HF Y      PSF   + +N  TH K   + ++   ++T R E +  T +L W
Sbjct: 425 THFRYWERQEIPSFAVFENKNRHTHEKKSSEKEVIPVYITYRKEWNGLTVILPW 478


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 403 VSADPLSPPTVENLTAIGVLLPMDSNTL 320
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 58  TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 234
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 235 IPE 243
             E
Sbjct: 160 AEE 162


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 629 KQVKKLMDGSLVLRSKSPKTCLDLSDVLQGFSSEYG*NSGK 507
           ++V K+M  +  +     K CL+++ +LQ  SSEY   SG+
Sbjct: 587 RRVLKIMSSNDNIDELFLKKCLNINLLLQHLSSEYSQISGQ 627


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 173 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 6
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,205,999
Number of Sequences: 5004
Number of extensions: 69139
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)