Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0837
(701 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 142 2e-34
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 138 5e-33
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 131 6e-31
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 1.2
02_04_0444 - 22974979-22975251,22975338-22975379,22975471-229754... 30 2.0
04_04_0234 - 23805383-23805502,23805652-23805733,23805820-238060... 29 2.7
04_01_0199 - 2377406-2377573,2377649-2377730,2378006-2378274,237... 29 3.6
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349... 28 6.2
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 6.2
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 6.2
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 28 8.3
02_04_0493 + 23435395-23436003 28 8.3
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 142 bits (344), Expect = 2e-34
Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVK 434
A+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T+RDPRGFAVK
Sbjct: 78 ARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPETIRDPRGFAVK 137
Query: 435 FYTDDGVWDLVGNNTPIFFIRDP-TFSRVLSILRRETLQHI*KIQTCFGTF*P*DQRTIH 611
FYT +G WDL+GNN P+FFIRD F V+ + H+ + F F ++H
Sbjct: 138 FYTREGNWDLLGNNFPVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVF-DFLSHHPESLH 196
Query: 612 QLLYLFGDRGIPDGYRHMNGYGSHTF 689
+LF D GIP YRHM+G+G +T+
Sbjct: 197 TFFFLFDDVGIPTDYRHMDGFGVNTY 222
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = +1
Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
TT +GAPV TVG GP LL+D + +++++ F RERIPERVV
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVAHFARERIPERVV 76
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 138 bits (333), Expect = 5e-33
Identities = 70/146 (47%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVK 434
A+GA A G+FEVTHDIT + A + G +TP+ VRFSTV E GS +T+RDPRGFA+K
Sbjct: 66 ARGASAKGFFEVTHDITHLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIK 125
Query: 435 FYTDDGVWDLVGNNTPIFFIRD-PTFSRVLSILRRETLQHI*KIQTCFGTF*P*DQRTIH 611
FYT +G WDLVGNN P+FFIRD F ++ L+ H+ + F ++H
Sbjct: 126 FYTREGNWDLVGNNFPVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFF-SHHPESLH 184
Query: 612 QLLYLFGDRGIPDGYRHMNGYGSHTF 689
+LF D GIP YRHM+G G +T+
Sbjct: 185 MFTFLFDDIGIPADYRHMDGSGVNTY 210
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/47 (53%), Positives = 34/47 (72%)
Frame = +1
Query: 112 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
+T SGAPV TVG GP LL+D + ++++++FDRERIPERVV
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVV 64
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 131 bits (316), Expect = 6e-31
Identities = 69/149 (46%), Positives = 90/149 (60%), Gaps = 4/149 (2%)
Frame = +3
Query: 255 AKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVK 434
A+GA A G+FEVTHDI+ + A + G +TP+ VRFSTV E GS +T+RDPRGFAVK
Sbjct: 66 ARGASAKGFFEVTHDISHLTCADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVK 125
Query: 435 FYTDDGVWDLVGNNTPIFFIRD----PTFSRVLSILRRETLQHI*KIQTCFGTF*P*DQR 602
FYT +G +DLVGNN P+FFIRD P + +Q +I F
Sbjct: 126 FYTREGNFDLVGNNMPVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSH----HPE 181
Query: 603 TIHQLLYLFGDRGIPDGYRHMNGYGSHTF 689
++H +LF D GIP YRHM G+G +T+
Sbjct: 182 SLHMFSFLFDDVGIPLNYRHMEGFGVNTY 210
Score = 60.1 bits (139), Expect = 2e-09
Identities = 27/49 (55%), Positives = 36/49 (73%)
Frame = +1
Query: 106 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVV 252
F TT SGAPV + TVG+ GP LL+D + +++++ FDRERIPERVV
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVV 64
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 504 LDLL*RKWEYYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 379
+D+L K + QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 376 IDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>02_04_0444 -
22974979-22975251,22975338-22975379,22975471-22975479,
22975783-22975968,22976063-22976299,22982410-22982625,
22982729-22983059,22983410-22983522,22984538-22984647,
22985325-22985439
Length = 543
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 IHSYVCSHQEYHGLQTSKEVDGWFSGL-KVKKSQNMSGSFRC 550
I + VC H+E HG+ + W +GL +V++S+ ++ SF C
Sbjct: 320 IENVVCFHEEDHGILWKHQ--DWRTGLAEVRRSRRLTVSFVC 359
>04_04_0234 -
23805383-23805502,23805652-23805733,23805820-23806088,
23806384-23806524,23806751-23806936,23807186-23807422,
23807505-23807720,23807816-23808146,23808257-23808369,
23808691-23808996,23809078-23809187,23810226-23810363,
23811230-23811497
Length = 838
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 IHSYVCSHQEYHGLQTSKEVDGWFSGL-KVKKSQNMSGSFRC 550
I + VC H+E HG+ + W +GL +V++S+ ++ SF C
Sbjct: 519 IENCVCLHEEDHGILWKHQ--DWRTGLAEVRRSRRLTVSFIC 558
>04_01_0199 -
2377406-2377573,2377649-2377730,2378006-2378274,
2379648-2379788,2380891-2381076,2381529-2381765,
2382077-2382292,2382389-2382719,2382842-2382954,
2383288-2383602,2383713-2383840,2385274-2385547
Length = 819
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 672 IHSYVCSHQEYHGLQTSKEVDGWFSGL-KVKKSQNMSGSFRC 550
I + VC H+E HG+ K D W +GL +V++S+ ++ SF C
Sbjct: 484 IENAVCLHEEDHGI-LWKHRD-WRTGLAEVRRSRRLTVSFIC 523
>04_04_1157 - 31333870-31334220,31334440-31334590,31334678-31334909,
31335001-31335211,31335517-31335635,31335720-31335953,
31336000-31336201,31336297-31336676,31336792-31336856,
31337362-31337427,31337883-31337957,31338233-31338304,
31338994-31339062,31339150-31339221,31339325-31339396,
31339791-31339862,31339947-31340018,31340474-31340545,
31340645-31340828,31341474-31341588
Length = 961
Score = 28.3 bits (60), Expect = 6.2
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 2/139 (1%)
Frame = +3
Query: 240 RTSGTAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDP 416
+T + K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 784 KTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED 838
Query: 417 RGFAVKFYTDDGVWDLVGNNTPIFFIRDPTFSRVLSILRRETLQHI*KIQTCFGTF*P*D 596
K Y + W+L NN P+ + DP ++ R E L+ I ++ + P
Sbjct: 839 -----KIYIFEWAWELYENNNPLGLV-DP---KLKEFNREEVLRAI-RVALLCTQWSPHQ 888
Query: 597 QRTIHQLL-YLFGDRGIPD 650
+ + +++ L GD +PD
Sbjct: 889 RAPMSRVVSMLAGDVEVPD 907
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 203 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 93
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 477 YYFQLNPTLHHQYRTLQQNLEGHEQYQQIHS 385
Y++ +PTL H+YR + +L +EQ QQ+ S
Sbjct: 363 YFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 240 RTSGTAKGAGAFGYFEVTHDITKYSAAKV-FESIGKRTPIAVRFSTVGGESGSADTVRDP 416
+T + K AG FGY + + + KV + G V T+ G DT+ +
Sbjct: 748 KTHVSTKVAGTFGYLAPEYAMRGHMTEKVDVFAFG-----VVLLETLAGRPNYDDTLEED 802
Query: 417 RGFAVKFYTDDGVWDLVGNNTPIFFIRDP 503
K Y + W+L NN P+ + DP
Sbjct: 803 -----KIYIFEWAWELYENNNPLGIV-DP 825
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 203 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 78
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,371,277
Number of Sequences: 37544
Number of extensions: 440776
Number of successful extensions: 1125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -