Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0837
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               29   4.8  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   6.4  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   28   8.4  
SB_25633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   8.4  
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                 28   8.4  

>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 506 IFPSFIHTQKRNPATHLKDPDMFWDFLTLRPENH 607
           +F  F   + ++       PD  WD++T+RP  H
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRPSAH 45


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 457  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 338
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 351 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 464
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 524 HTQKRNPATHLKDPDMFW 577
           HT+ RNP T +++P+ +W
Sbjct: 531 HTRIRNPLTRIRNPEPYW 548


>SB_25633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 694 AWNVWEPYPFICL*PSGIPRSPNK*RS*WMVLWS*GQKVPKHVWIFQMCCRVSLLSMDKT 515
           AWNVWE +P +    + +   PNK      VL S G      V ++   C++S  S++ T
Sbjct: 86  AWNVWEAFPEVSSALTALSDFPNK----ETVLASIGSLECFFVLLYSKMCQLS--SVNDT 139

Query: 514 RENV 503
           R+ +
Sbjct: 140 RKEM 143


>SB_16747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 491 YKRSNIFPSFIHTQKRNPATHLKDPD 568
           YK+  I P+ IHT++  P+T   +PD
Sbjct: 19  YKKEPIKPTQIHTKRWRPSTDFFEPD 44


>SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 700 SQAWNVWEPYPFICL*PSGIPRSPNK 623
           + AWNVWE +P +    S     PNK
Sbjct: 593 ASAWNVWEAFPEVSSTLSAFSDPPNK 618


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 104 PGESFKVFL*LMSWSVAGSLEAILYVP 24
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/37 (29%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = -1

Query: 635 VSKQVKKLMDG-SLVLRSKSPKTCLDLSDVLQGFSSE 528
           V K VK+ + G   +++ ++ K C+++SD+++G ++E
Sbjct: 7   VIKLVKRKVGGLGFLVKERASKPCVEISDIVKGSAAE 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,611,276
Number of Sequences: 59808
Number of extensions: 508584
Number of successful extensions: 1247
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)