Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0836
         (659 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0GTY5 Cluster: MobD; n=6; Lactococcus lactis|Rep: MobD...    35   2.0  
UniRef50_A7TIY9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q7X3T3 Cluster: Putative immunity protein; n=1; Lactoba...    33   8.0  
UniRef50_Q1NR42 Cluster: Sensor protein; n=3; delta proteobacter...    33   8.0  

>UniRef50_Q0GTY5 Cluster: MobD; n=6; Lactococcus lactis|Rep: MobD -
           Lactococcus lactis
          Length = 505

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = -2

Query: 376 KKH*HNYFGNIISCTNATLKNGYKIHKKKRITM*KTSXXXXXXXXXXXXXF---KTGNSH 206
           K H HN+   +++ TN    N ++ +K    T+ + S                 K GNSH
Sbjct: 119 KDHLHNHI--VLNATNPLTLNKFQQNKNDLETLKEISDRISKEYGCKIIVRPEQKLGNSH 176

Query: 205 RNWSVFVLSNSFKRE--NKINYI 143
           +N+ V++  NS+++E  NK+ ++
Sbjct: 177 KNYLVYLAQNSYRKEIKNKLEFL 199


>UniRef50_A7TIY9 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 387

 Score = 33.1 bits (72), Expect = 6.1
 Identities = 23/58 (39%), Positives = 32/58 (55%)
 Frame = -3

Query: 624 KVINTKKNGSIFKVVTNNI*N*HNKTDKIIISN*I**LKSFLSIYSIDNGAVLELLII 451
           K+  + ++G I  V   N     NKTDK+II N I  +KS +SI S DN  +L   +I
Sbjct: 277 KIYCSTRSGLIVSVDLMNKDTIRNKTDKLIIYN-IPDIKSVISIKSGDNNGILYASVI 333


>UniRef50_Q7X3T3 Cluster: Putative immunity protein; n=1;
           Lactobacillus gasseri|Rep: Putative immunity protein -
           Lactobacillus gasseri
          Length = 90

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 231 NKYKYIYRNVIN-DVFHIVIRFFLCIL*PFFRVAF 332
           N  KY++ NV + D FH+  ++F+C   PF  V F
Sbjct: 49  NNPKYLFNNVEHHDFFHVFYQYFICSYIPFIDVIF 83


>UniRef50_Q1NR42 Cluster: Sensor protein; n=3; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 498

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = -3

Query: 243 IYIYLFSKLVTLIGTGVSLY 184
           +YI LFS +VTL+GTG+ LY
Sbjct: 17  LYIVLFSSVVTLLGTGLQLY 36


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,904,637
Number of Sequences: 1657284
Number of extensions: 9468687
Number of successful extensions: 20038
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20024
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)