Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0836
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0309 - 21924042-21925580                                         29   4.3  
06_03_0771 + 24473176-24473203,24473292-24474025,24474104-244745...    28   5.7  

>02_04_0309 - 21924042-21925580
          Length = 512

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
 Frame = +1

Query: 22  GVLQPVLDRRPAQTR-RPMQMLGG*KINVTSTI*NGVEVPYKYNLSYFLF 168
           G+L  ++DRR A+TR  P +   G  ++   ++ +  ++P +Y+++Y LF
Sbjct: 253 GLLDDIIDRRMAETRDHPDKQRHGDFLDALISLASAGKIP-RYHITYLLF 301


>06_03_0771 +
           24473176-24473203,24473292-24474025,24474104-24474565,
           24474647-24475479,24475562-24475732,24475812-24476112
          Length = 842

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 11  VAPGVSFNPSLTDALHKHD 67
           VA G++FNPS+TD +H  D
Sbjct: 427 VAEGMAFNPSVTDKVHGAD 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,973
Number of Sequences: 37544
Number of extensions: 224270
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)