Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0836
         (659 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    28   5.1  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 514 LLYSI*YYNFICFIVS-VLNII---SNDFKNTAIFFCINYFLISV 636
           L+ SI  +  IC I S ++NI        KN  + FC  YFL +V
Sbjct: 10  LVLSINLFGVICSIFSCIMNIFILKKEKKKNEMVLFCFRYFLAAV 54


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +1

Query: 532 YYNFICFIVSVLNIISNDFKNTAIF------FCINYFLISVS 639
           Y N++ F+VS++ II N F    +F        IN F+I ++
Sbjct: 20  YLNYVIFVVSIIGIILNVFHFLVLFRKSMRQLTINIFMIGIA 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,964,413
Number of Sequences: 27780
Number of extensions: 240021
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)