Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0835
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 50 2e-07
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 50 3e-07
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 41 1e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.009
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 1.9
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 26 4.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 4.4
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 5.8
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 7.6
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 7.6
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.6
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 50.4 bits (115), Expect = 2e-07
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 GDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGVPAQ 442
G F + L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+P
Sbjct: 60 GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGLPEI 119
Query: 443 ETFQTVDLWERQNLNSVVICL 505
F+ D++E +NL V+ C+
Sbjct: 120 FHFELTDIYEGKNLPKVIYCI 140
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 49.6 bits (113), Expect = 3e-07
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 293 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 469
L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT DL+
Sbjct: 31 LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89
Query: 470 ERQNLNSVV 496
ER+N V+
Sbjct: 90 ERRNDEQVL 98
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 41.1 bits (92), Expect = 1e-04
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 251 TKNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQL 427
T N ++D+F + L +G +LC+LA +P + ++ + +NAF +
Sbjct: 78 TNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFI 137
Query: 428 GVPAQETFQTVDLWERQNLNSVVICL 505
G+ F+T DL R N+ V+ CL
Sbjct: 138 GMFTPFRFETKDLVRRFNIPKVIYCL 163
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 34.7 bits (76), Expect = 0.009
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +2
Query: 281 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 430
F++ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 30.3 bits (65), Expect = 0.20
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +2
Query: 278 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 430
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 1.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 350 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 472
++ +S A E + AF+E A+Q G+P E W+
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 158
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 236 DDHRRTKNTSGDMDNFYEVLKDGTL 310
D+ R++K +S D D+F E+L +GT+
Sbjct: 352 DNPRQSKESSFDDDDFDELLGNGTI 376
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Frame = +2
Query: 26 PVDPPACLHSVHSDFTFYRVCDLFK*FIKLLLVRNGKQ-PSDQIRICS*SPEKDQQQIQR 202
P PP L S H +FT F+ L R+ + S RI +P D QI
Sbjct: 166 PPIPPEFLKSRHKEFTIPNPLQFISNFLSNLFSRDTRYLKSSHGRIIIINPYDDSSQIDE 225
Query: 203 GAG 211
G
Sbjct: 226 RTG 228
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 5.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 442 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 329
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 156 LIWSLGCLPFRTNNNLINYLNK 91
LIW+ CL T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 7.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 247 PVIIRIHSKDSWASSSLYLL 188
P IIR H +D W S + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 7.6
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -1
Query: 525 SLSAQCCKQITTELRFCLS 469
+L+A+CC ++ + R+CLS
Sbjct: 407 TLAAKCCVKLDAKYRWCLS 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,537
Number of Sequences: 5004
Number of extensions: 53130
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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