Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0835
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.) 83 1e-16
SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10) 75 5e-14
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12
SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05) 58 5e-09
SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_36121| Best HMM Match : CH (HMM E-Value=0.0017) 45 5e-05
SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8) 39 0.003
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.004
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 35 0.052
SB_15403| Best HMM Match : CH (HMM E-Value=0) 33 0.12
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 33 0.16
SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34) 29 2.0
SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7) 29 2.6
SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20) 28 4.5
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 4.9
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12) 28 6.0
SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89) 28 6.0
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22) 27 7.9
SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45) 27 7.9
SB_16451| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_40412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 83.4 bits (197), Expect = 1e-16
Identities = 41/88 (46%), Positives = 57/88 (64%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 454
D+ +EVLKDG +LC++AN + N+ KIN+S MAFK MEN FLE +GVP + FQ
Sbjct: 92 DDVHEVLKDGQVLCRVANKLGGNI--KINSSKMAFKMMENTGKFLEFCDTIGVPKTDMFQ 149
Query: 455 TVDLWERQNLNSVVICLQHWAERLEPTG 538
TVDL+E+QN+ V+ + + TG
Sbjct: 150 TVDLYEKQNMPGVINGIHALGRKAHSTG 177
>SB_7905| Best HMM Match : CH (HMM E-Value=1.3e-10)
Length = 172
Score = 74.5 bits (175), Expect = 5e-14
Identities = 38/80 (47%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 NTSGDM-DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGV 433
N GD D+F LK G +LCKLAN I P IKKIN + M F MENI F + GV
Sbjct: 81 NFGGDTADDFQNTLKSGVVLCKLANAIQPGAIKKINNAKMNFMMMENIENFCNFVQTKGV 140
Query: 434 PAQETFQTVDLWERQNLNSV 493
+Q F T+DL+E +N++ V
Sbjct: 141 ASQYQFVTIDLFEGKNMHQV 160
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +2
Query: 263 SGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLE-AARQLGVPA 439
+G +D ++ LKDG +LC+LAN + ++ KIN M FK MENI FL LGV
Sbjct: 452 NGGVDTVHQTLKDGQVLCRLANRLGGDL--KINQQKMPFKQMENIGNFLSFIENNLGVAK 509
Query: 440 QETFQTVDLWERQNLNSVVICLQHWAERLEPTG 538
+ FQTVDL+E+ N+ +V+ C+ R G
Sbjct: 510 NDLFQTVDLYEKSNMWNVICCIHAVGRRAYSLG 542
>SB_39070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 68.1 bits (159), Expect = 5e-12
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLE-AARQLGVPAQETF 451
+ F E L+ G +LCK+AN I N I KI S+ +F ENI+ FL+ R LG+ F
Sbjct: 303 ETFAEPLRSGVILCKIANKIKSNAIPKIGESNKSFVMQENISKFLDFCERVLGLDRLNLF 362
Query: 452 QTVDLWERQNLNSV 493
QTVDL+ERQN+ V
Sbjct: 363 QTVDLFERQNVGMV 376
Score = 35.5 bits (78), Expect = 0.030
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 135 NNRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 251
+N+ G AE RKI SKY EL + +W+ + GE
Sbjct: 9 SNKHKSFGLTAEVNRKIQSKYDTELEMQCRDWLEKMLGE 47
>SB_18673| Best HMM Match : CH (HMM E-Value=2.5e-05)
Length = 195
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 454
D+ +VLKDG +L +LA + + K+N +M FK MENI FL LGV + + FQ
Sbjct: 50 DDVQKVLKDGKILARLAIKLGAKI--KVNEQNMPFKQMENIGNFLSHCGHLGVASGDQFQ 107
Query: 455 TVDLWERQNLNS 490
T DL++ N+ S
Sbjct: 108 TADLYDNANMTS 119
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 156 GFAAEAQRKINSKYSEELAHESLEWIRMITGE 251
G +A A RKI KY + E+ WI + GE
Sbjct: 9 GMSAAANRKILEKYDPQQEEEARIWIEAVLGE 40
>SB_23839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 267
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +2
Query: 323 ANNIHPNMIKK--INTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWERQNL 484
AN I P +IKK +N M FK MENI F+ + GV + F TVDL+E++N+
Sbjct: 188 ANAIQPGVIKKPHLNPGKMGFKMMENIGWFVNFIKSYGVQEEYIFVTVDLYEKRNV 243
>SB_20280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +2
Query: 242 HRRTKNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSM--AFKCMENINAFLEA 415
H R + + + +F + L+DG LLC++AN +HP + + F C++NI FL A
Sbjct: 38 HGRVTDPNFTLFDFAQSLRDGVLLCQVANVLHPGAVVDVGMKPQMSQFMCLKNIRNFLTA 97
Query: 416 ARQL-GVPAQETFQTVDLWERQNLNSVV 496
+L + + F +L++ + VV
Sbjct: 98 CTRLFNLADGDLFDANELYDVSDFGKVV 125
>SB_28994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 44.8 bits (101), Expect = 5e-05
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAF------KCMENINAFLEAARQLGVP 436
D+ L DG +LC L N+ + I I+ S KCM+N++ FLEA ++LGV
Sbjct: 330 DDLPASLADGVVLCHLVNSAYKGTIPSIHIPSAGVPKLTMTKCMKNVDYFLEACKKLGVD 389
Query: 437 AQETFQTVDLWERQNLNSVVICLQHWAERLE 529
+ + D+ + ++ V +Q +R +
Sbjct: 390 RELLCSSADILQEKSPQRVCATVQALLDRAD 420
>SB_36121| Best HMM Match : CH (HMM E-Value=0.0017)
Length = 209
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQLGVPAQETFQ 454
D+F E L DG LLC+L N+ + +IN A +N++ F A LG+ + F+
Sbjct: 48 DDFRESLADGVLLCELIVNVANISVGRINKQGTAHAGRDNLSVFFRACEALGLDKYQLFE 107
Query: 455 TVDLWE 472
DL E
Sbjct: 108 HEDLDE 113
>SB_18675| Best HMM Match : NUMOD3 (HMM E-Value=8)
Length = 89
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 386 MENINAFLEAARQLGVPAQETFQTVDLWERQNL 484
MENI FL LGV + FQTVDL+E+QN+
Sbjct: 18 MENIGNFLLFCESLGVSKVDLFQTVDLYEKQNM 50
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 38.3 bits (85), Expect = 0.004
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 359 NTSSMAFKCMENINAFLEAARQ--LGVPAQETFQTVDLWERQNLNSVVICLQHWAERL 526
N S + ENI FL A ++ Q+ FQTV L+ERQNL V+ +Q +A ++
Sbjct: 889 NRKSTSLGMQENIANFLNACQEEPFNCNPQDLFQTVYLFERQNLGQVISGIQAFARKV 946
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 34.7 bits (76), Expect = 0.052
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +2
Query: 386 MENINAFLEAARQLGVPAQETFQTVDLWERQNLNSV 493
M I FL+ GV + FQTVDL+E+QN+ V
Sbjct: 700 MVTIAKFLDFCGTFGVAKSDLFQTVDLYEKQNIQQV 735
Score = 34.3 bits (75), Expect = 0.069
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 138 NRATKSGFAAEAQRKINSKYSEELAHESLEWIRMITGE 251
NR G AE RK+++KY + E+++WI + GE
Sbjct: 661 NRQKGYGMTAELSRKMSAKYDPVMDAEAVDWIEKVLGE 698
>SB_15403| Best HMM Match : CH (HMM E-Value=0)
Length = 1907
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +2
Query: 257 NTSGDMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTSSM-AFKCMENINAFLEAARQL 427
+ S D + YE +KDG LLCK+ N P I + IN + F EN + +A +
Sbjct: 71 DASEDSSDLYEKVKDGILLCKMINLSAPGTIDERVINKPPLKVFTIHENQTLVINSALAI 130
Query: 428 G 430
G
Sbjct: 131 G 131
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 33.1 bits (72), Expect = 0.16
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNI----------HPNMI--KKI--------NTSSMAFKCMEN 394
D F+ L+DGTLLCKLAN I H + KKI + S F EN
Sbjct: 691 DFFFYALEDGTLLCKLANYIQEMADTYGQKHNTHVPGKKIKFKESKRGHRESKLFHSREN 750
Query: 395 INAFLEAARQLGVPAQETFQTVDLWE----RQNLNSVVICLQHWAERL 526
+ FL R +P F++ D+ R +VICL A R+
Sbjct: 751 VQKFLTWCRWHDIPEAILFESNDVVLVDECRTGGREIVICLMEIARRV 798
>SB_48765| Best HMM Match : A1pp (HMM E-Value=3.5e-34)
Length = 354
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 133 QTTERPNQDLQLKPRERSTANTARSW--PTSP 222
+T RP Q LQ+KP S A T R+ PT P
Sbjct: 213 ETARRPGQGLQVKPAAESNAQTDRNARPPTKP 244
>SB_15741| Best HMM Match : MANEC (HMM E-Value=2.7)
Length = 263
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -1
Query: 558 FRSY*RLPVGSSLSAQCCKQITTELRFCLSHRSTV*KVSCAGTPNCLAASRKALIF 391
FR R+P + CC +L F L R V+C+ + +C+A + K+ +F
Sbjct: 45 FRDRGRVPGIKECAEVCCIAKECDLAFMLEDRCF--SVTCSSSSSCVAVAAKSSVF 98
>SB_39228| Best HMM Match : IBR (HMM E-Value=4.1e-20)
Length = 303
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 123 FEMANNRATKSGFAAEAQRKINSKYSEELAHESLEWI 233
FE N A AE QRKIN K E++ + WI
Sbjct: 180 FERWQNHADSLKKEAETQRKINQKIQEKVNNNIGTWI 216
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 25.0 bits (52), Expect(2) = 4.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 184 STANTARSWPTSPWNGFG*SPANQEHLRGYGQLL 285
+T+ A T PWN F + +Q HL G ++
Sbjct: 1161 TTSGLANIGKTKPWNKFMANTDSQAHLETLGSVI 1194
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 316 QASQQHPPEHDQKDQHIV 369
Q+S + PP D QHI+
Sbjct: 1235 QSSDRLPPTSDSLKQHII 1252
>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
Length = 906
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 275 DNFYEVLKDGTLLCKLANNI 334
DNF + L +G LLCKLA I
Sbjct: 56 DNFMDYLDNGVLLCKLAQLI 75
>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 653
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 120 NNNLINYLNKSQT-R*KVKSLCTECKQAGGSTGHVRVTR 7
+ ++ L K+ T + KVKS+ T ++AG STG V TR
Sbjct: 560 DETVVRGLCKTMTEKAKVKSIITLAEEAGMSTGFVTTTR 598
>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
Length = 589
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 218 VLGMDSDDHRRTKNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI 397
+LG ++ ++ T ++ K+ T L +L NN + K ++ + +FK +EN
Sbjct: 67 LLGKSIEEAKKEPGTQLITEDLNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENE 126
Query: 398 NAFLEA 415
N L +
Sbjct: 127 NEHLRS 132
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2
Query: 218 VLGMDSDDHRRTKNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI 397
+LG ++ ++ T ++ K+ T L +L NN + K ++ + +FK +EN
Sbjct: 3173 LLGKSIEEAKKEPGTQLITEDLNRRKKENTKLRELLNNAQEDAKKPVSENMESFKRIENE 3232
Query: 398 NAFLEA 415
N L +
Sbjct: 3233 NEHLRS 3238
>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
Length = 820
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 269 DMDNFYEVLKDGTLLCKLANNIHPNMI 349
D++NF +DG +C+L N + P +I
Sbjct: 445 DINNFDTDWRDGMAICELVNALQPGLI 471
>SB_28990| Best HMM Match : YABBY (HMM E-Value=0.45)
Length = 853
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 403 FPRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAALGR--EAGTYGKPSIG 552
FPR R++ CTGT C QL +++ A +G G PS G
Sbjct: 324 FPRPRRSWPCTGTTQTFTCMDASYYR-QLAPEIIKAFSTTLASGAAGSPSAG 374
>SB_16451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 DSDDHRRTKNTSGD-MDNFYEVLKDGTLLCKLANNIHPNMIKKINTS 367
D +D+ K GD + +F + + G LL + A+N+ N++KK S
Sbjct: 66 DDNDNEEDKFDVGDKLKDFLDKKEKGELLIQKASNLLGNILKKTELS 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,726,216
Number of Sequences: 59808
Number of extensions: 433920
Number of successful extensions: 1305
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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