Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0834
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 32 0.067
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.4
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 27 1.9
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.3
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 3.3
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 3.3
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 5.8
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 26 5.8
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 5.8
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce... 25 7.7
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 32.3 bits (70), Expect = 0.067
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 330 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNE 509
+++ YN+ M TS+C+C++ + YGGN A E F E F +Y + +
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEEFSFHFRGPIELK-RFAVYYPDTSN 104
Query: 510 PWSSIR 527
SS+R
Sbjct: 105 ALSSLR 110
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = +3
Query: 18 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 131
+I+ V+N I+D+ + ++C ++W G ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 468 NDVLFFIYNREFNEPWSSIRS*TPRETARPLDTTVKSPVFLKSTRGSLH 614
ND+ N +F+ PW I S R + + P+FL + GS H
Sbjct: 1560 NDMGLRDLNTKFDSPWPCISSPIYRYRGPSAGSVEREPLFLIAASGSPH 1608
>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.6 bits (56), Expect = 3.3
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +3
Query: 390 RDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYN 494
R R+V G ++A + + W F +Y ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +3
Query: 327 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 422
+HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 21 IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 122
+++++ NL I N +EY LW NG I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -1
Query: 134 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 30
W+VLF + L+ ++ P V LHGV + VN + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Frame = +3
Query: 303 ENNRV-YFKAHNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVL 479
EN++V K+ K N+ +S S + D + G + +T +++F Q +
Sbjct: 50 ENSKVPASKSKVQKRNESEDISHSLPSIVHEDDKLVGSDGVSTTPDEYFEQQSTRSRSKP 109
Query: 480 FFIYNREFNEPWSSIRS*TPRETARPLDTTVKSPVFLKSTRGS 608
I N+E + A LDTT S + TR +
Sbjct: 110 RIISNKETTTSKDVVHPVKTENFANDLDTTSDSKPVVHQTRAT 152
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 418 LLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVMNFQLTSSV--CLSTHRR 245
L PP T +R L Q+D L++ + YL LK T + V N + S V L T R
Sbjct: 299 LTPPSLTDTRQLMQQLDQLLYTLFSYLDS-NLKSTSRDRYLVYNSLIKSFVNTVLKTFRC 357
Query: 244 RILSF 230
R F
Sbjct: 358 RYTQF 362
>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 361 IFKYWLYLVLWALKYTLLFSHKVMNFQLTSSVCLSTHRRRILSFEGLVV 215
IF+Y YL W+L + L +N + + S ++R+++ LV+
Sbjct: 302 IFEYVFYLSSWSLVFLLTLPATTINRENFQPLKSSFRKKRLMNNRRLVL 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,775
Number of Sequences: 5004
Number of extensions: 50670
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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