Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0834
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0349 - 14738360-14738385,14738762-14738807,14738887-147391...    32   0.49 
04_03_0379 + 15141127-15141231,15141566-15141769,15141856-151420...    29   2.6  
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   4.5  

>04_03_0349 -
           14738360-14738385,14738762-14738807,14738887-14739123,
           14739213-14739332,14739702-14739758,14740262-14740318,
           14740412-14740468,14742372-14742531,14742972-14743006,
           14743083-14743151,14743282-14743333,14743660-14743739,
           14743832-14743939,14744583-14744771,14744846-14744984,
           14745845-14746026,14746113-14746316,14746651-14746755
          Length = 640

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +2

Query: 443 VLPARQVRKRRPVLHLQPRIQRALELDTIVNASGDRKAVGHDGEVS 580
           ++ A Q+ ++RP + +QPRI R L+L    +A   +  V  + +V+
Sbjct: 446 IVEALQLNQKRPAMKIQPRIARELQLSLNKHARKVQPGVARESQVN 491


>04_03_0379 +
           15141127-15141231,15141566-15141769,15141856-15142037,
           15142898-15143036,15143111-15143299,15143943-15144050,
           15144143-15144222,15144549-15144600,15144731-15144799,
           15144876-15144910,15145351-15145510,15147414-15147470,
           15147566-15147622,15147971-15148027,15148126-15148182,
           15148551-15148670,15148760-15148996,15149550-15149591
          Length = 649

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +2

Query: 443 VLPARQVRKRRPVLHLQPRIQRALEL 520
           ++ A Q+ ++RP + +QPRI R L+L
Sbjct: 446 IVEALQLNQKRPAMKIQPRIARELQL 471


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 154 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 47
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,995,342
Number of Sequences: 37544
Number of extensions: 328821
Number of successful extensions: 958
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)