Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0834
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)            28   6.1  

>SB_29522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = -2

Query: 622 LERCNEPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGSLNS 497
           +ER N+P V+ R + +  +    L +SR   +++ ++GS+NS
Sbjct: 30  VERHNKPEVEVRSSKELLLTP--LVISRNEKEKVLIEGSINS 69


>SB_45853| Best HMM Match : VKG_Carbox (HMM E-Value=8.8e-25)
          Length = 854

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 231 NERILRRWVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTSTCN 380
           N   +R W+    +  ++K    W+N  V  K     +N+Y++ +TS  N
Sbjct: 731 NNETIRDWIINPEKNPAYKLKAEWKNMNVAQKFKVWSFNKYMEFATSFWN 780


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,577,160
Number of Sequences: 59808
Number of extensions: 386577
Number of successful extensions: 1263
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)