Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0834
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    29   3.1  
Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    28   7.1  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   9.4  

>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 441 WFFQ-PAKYENDVLFFIYNREFNEPWSSI 524
           WF   PA  EN+  ++ Y ++ NE W SI
Sbjct: 287 WFVNYPATAENNRAYYAYRQKLNEYWESI 315


>Z92847-6|CAB07423.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 192 NLALKLGSTTNPSNERILRRWVDKHTELVSWKFITLWENNRVYFKAH 332
           NL   LGS     +  IL+  V+  T  + W    LWEN   Y   H
Sbjct: 291 NLTQTLGSNQIQISSSILK--VNGSTVPIDWSGFVLWENGDEYISMH 335


>Z73911-9|CAA98143.1| 1076|Caenorhabditis elegans Hypothetical
           protein T12A7.5 protein.
          Length = 1076

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 192 NLALKLGSTTNPSNERILRRWVDKHTELVSWKFITLWENNRVYFKAH 332
           NL   LGS     +  IL+  V+  T  + W    LWEN   Y   H
Sbjct: 291 NLTQTLGSNQIQISSSILK--VNGSTVPIDWSGFVLWENGDEYISMH 335


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
           protein Y18H1A.3 protein.
          Length = 1258

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 26/99 (26%), Positives = 42/99 (42%)
 Frame = -2

Query: 607 EPRVDFRKTGDFTVVSNGLAVSRGVHDRIELQGSLNSRL*MKNRTSFSYLAGWKNHCSLV 428
           +PR D  +TGD    SN +A     HD  ++  ++ S     +    ++L  W+   SLV
Sbjct: 514 DPRNDSSETGDSMSSSNTIAEDNVFHDTDDITNAVTS----WSGDKLAWLQTWRRVISLV 569

Query: 427 LSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTL 311
                 PYT  S  + +    L  +  L + L  L + L
Sbjct: 570 -----DPYTNSSAHVAIDCMSLTIENLLLVNLHPLAHWL 603


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +3

Query: 69  TMEYCYKLWVGNGQDIVKKYFPLSFRLI 152
           T  YC+K ++ +  +++K+Y  + + L+
Sbjct: 557 TYRYCHKFYLKDNSEVIKEYLGIFYHLV 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,404,536
Number of Sequences: 27780
Number of extensions: 286238
Number of successful extensions: 1060
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)