Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0834
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.3  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 631 SGRLERCNEPRVDFRK 584
           SG+LER  E R+  RK
Sbjct: 554 SGKLERTEEQRIALRK 569


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 631 SGRLERCNEPRVDFRK 584
           SG+LER  E R+  RK
Sbjct: 592 SGKLERTEEQRIALRK 607


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 344 QPVLEDEYVDLQLQRSG 394
           +PV+ +E VD  L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 322 KYTLLFSHKVMNFQLTSSVCLSTH 251
           KYT  F+H+ +N +  S++ L  H
Sbjct: 242 KYTRSFAHQSINKEARSNLYLPFH 265


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 322 KYTLLFSHKVMNFQLTSSVCLSTH 251
           KYT  F+H+ +N +  S++ L  H
Sbjct: 237 KYTRSFAHQSINKEARSNLYLPFH 260


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 246 VEFSHSRDWLWNRASERG 193
           V +++  +WLW    ERG
Sbjct: 64  VAYNNVNNWLWTPFIERG 81


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,905
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)