Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0834
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.058
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.2  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    29   2.9  
At1g78240.1 68414.m09118 dehydration-responsive protein-related ...    29   2.9  
At3g63320.1 68416.m07123 protein phosphatase 2C-related / PP2C-r...    29   3.8  
At4g00752.1 68417.m00103 UBX domain-containing protein similar t...    28   5.0  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    28   5.0  
At4g16050.1 68417.m02435 expressed protein                             27   8.8  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 45  LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 143
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 45  LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 143
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/62 (35%), Positives = 29/62 (46%)
 Frame = -2

Query: 415 LPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVMNFQLTSSVCLSTHRRRIL 236
           LP Y   S  L+  +D L+ K W YL L  + YT     K MN      V LS+ +R + 
Sbjct: 265 LPHYCPVSAHLEWNLDGLLDKIWEYLDLTRI-YT---KPKAMNPDYDDPVILSSKKRTVE 320

Query: 235 SF 230
            F
Sbjct: 321 DF 322


>At1g78240.1 68414.m09118 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 684

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 219 TNPSNERILRRW--VDKHTELVSWKFITLWENNRVYFKAHNTK 341
           TNP N+  L+RW  V    E + W  +   +   V+ K  NTK
Sbjct: 378 TNPRNKDHLKRWNFVHDFAESICWTLLNQQDETVVWKKTINTK 420


>At3g63320.1 68416.m07123 protein phosphatase 2C-related /
           PP2C-related protein phosphatase 2C - Rattus norvegicus,
           EMBL:AF095927
          Length = 423

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = -2

Query: 544 SRGVHDRIELQGSLNSRL*MKNRTSFSYLAGWKNHCSLVLSALL 413
           S G+ +++E+Q + +    +KN+TSF   AG  ++CS+ L+  L
Sbjct: 319 SDGIFEKLEVQDACDRLWEVKNQTSFG--AGVPSYCSISLADCL 360


>At4g00752.1 68417.m00103 UBX domain-containing protein similar to
           Ara4-interacting protein [Arabidopsis thaliana]
           GI:13160609; contains Pfam profiles PF00789: UBX domain,
           PF02809: Ubiquitin interaction motif
          Length = 469

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 434 GAMVLPARQVRKRRPVLHLQPRIQRALELDTIVNA-SGDRKAVGHDGEVSGLPEIYSW 604
           GA+       R  RP L L P  +R +      +A SG      H GEV+G P   +W
Sbjct: 86  GALPSILSAARAFRPSLLLDPNYRRNILRQLSGSALSGSPSPSSHTGEVTGFPAHSTW 143


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/66 (25%), Positives = 32/66 (48%)
 Frame = +3

Query: 225 PSNERILRRWVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLKMSTSTCNCNARDRVV 404
           PS ER  +   D+ ++ V++K      + RV FK+ N + +  +   +     + RDR +
Sbjct: 239 PSKERAFKSRNDEPSQRVAFKSRNDDPSQRVAFKSRNDEPSHRVAFKSRNDESSQRDRPL 298

Query: 405 YGGNSA 422
           Y  + A
Sbjct: 299 YSADWA 304


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 497 RIQRALELDTIVNASGDRKAVGHDGEVSGLPE 592
           RI    + D I N  G+R  +  D  VSGLP+
Sbjct: 550 RINSRKKSDDIENTEGERSRLVADNNVSGLPQ 581


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,714
Number of Sequences: 28952
Number of extensions: 261409
Number of successful extensions: 742
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)