Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0833
(674 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 138 9e-34
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy... 28 1.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 1.9
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 27 1.9
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 4.3
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 26 5.7
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 26 5.7
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 26 5.7
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch... 25 7.6
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 138 bits (333), Expect = 9e-34
Identities = 60/87 (68%), Positives = 72/87 (82%)
Frame = +1
Query: 256 DRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSAD 435
DRERIPERVVHAKG+GAFG FE T DITKY+ +F +GK+TP+ RFSTVGGE G+ D
Sbjct: 50 DRERIPERVVHAKGSGAFGEFECTDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPD 109
Query: 436 TVRDPRGFAVKFYTDDGVWDLVGNILP 516
T RDPRGFA+KFYTD+G++D+VGN P
Sbjct: 110 TARDPRGFALKFYTDEGIFDMVGNNTP 136
Score = 78.2 bits (184), Expect = 1e-15
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +3
Query: 510 TPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
TP+FF+RDP FP FIHTQKRNP +KD MFWD+L+ E+IHQ++ LF
Sbjct: 135 TPVFFLRDPAKFPLFIHTQKRNPQNDMKDATMFWDYLSQNAESIHQVMILF 185
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +2
Query: 146 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLD 241
TT +G P+ A VGK GP LLQD + +D
Sbjct: 13 TTNTGCPIFNPMAAARVGKGGPVLLQDSHLID 44
>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 538
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 522 FIRDPTLFPSFIHTQKRNPATHLKDP 599
+++DPTL P F+HT R T +P
Sbjct: 506 WVKDPTLTPKFLHTSYRAVQTDNDNP 531
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 463 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 338
++ E +E+Y+Q+ + SV + + W Q+L+ CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 522 FIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQ-LLYLFGRP 671
F +P + +H N L FW F +++PE H+ +L+L G P
Sbjct: 34 FPNEPVDYEGRMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGP 84
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -3
Query: 261 PVKDDISSRKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGS 82
PV I + S + P + T ++ L+P + L V+ P + +
Sbjct: 179 PVSSSIQDVPVMSTEQ--PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPD 236
Query: 81 LEAILYVPFLLCGV 40
LE I Y+PFLL G+
Sbjct: 237 LEFISYLPFLLDGL 250
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 89 LGLLKPFCMFPSYYAAFVV*YHGATHW 9
LG+ +PF ++ +Y V YH + W
Sbjct: 334 LGISRPFMVYSTYQQVLVETYHQLSKW 360
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 25.8 bits (54), Expect = 5.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +3
Query: 504 KYTPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
+Y +F D ++ HT+K K WDF R E + +LL F
Sbjct: 310 EYCFMFDESDILQLRNYEHTEKELSVLQFKGVSSRWDFRCCREERLLRLLLCF 362
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 437 VSADPLSPPTVENLTAIGVLLPMDSNTL 354
VS +P + +NLTAIGV P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167
>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 372
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = -3
Query: 261 PVKDDISSRKLTSCNK---AGPFLPTVCIAVLIPTGAPDLV 148
P DD S K K + PF P V L P +PD +
Sbjct: 261 PTMDDFSRIKSARARKYIKSLPFTPKVSFKALFPQASPDAI 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,017,097
Number of Sequences: 5004
Number of extensions: 65066
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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