Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0833
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 126 2e-29
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 122 3e-28
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 120 1e-27
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 33 0.28
02_04_0226 + 21073967-21074179,21074711-21074832,21074926-210753... 29 4.5
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 5.9
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 28 5.9
12_02_0674 - 21745321-21746223,21746229-21747608 28 7.8
02_04_0493 + 23435395-23436003 28 7.8
02_03_0141 - 15649188-15649274,15649376-15649421,15650476-156506... 28 7.8
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 126 bits (303), Expect = 2e-29
Identities = 63/116 (54%), Positives = 74/116 (63%)
Frame = +1
Query: 169 WNQNGDTNGGQEWSSLITGC*LS**NVILDRERIPERVVHAKGAGAFGYFEVTHDITKYS 348
WN N G L+ L DRERIPERVVHA+GA A G+FEVTHDIT +
Sbjct: 26 WNNNNSLTVGSRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDITHLT 85
Query: 349 AAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNILP 516
A + G +TP+ VRFSTV E GS +T+RDPRGFA+KFYT +G WDLVGN P
Sbjct: 86 CADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAIKFYTREGNWDLVGNNFP 141
Score = 52.0 bits (119), Expect = 4e-07
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 513 PIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
P+FFIRD FP +H+ K NP +H+++ DF + PE++H +LF
Sbjct: 141 PVFFIRDGMKFPDMVHSLKPNPKSHVQENWRILDFFSHHPESLHMFTFLF 190
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +2
Query: 146 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSS 253
+T SGAPV TVG GP LL+D + ++++++
Sbjct: 18 STNSGAPVWNNNNSLTVGSRGPILLEDYHLVEKLAN 53
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 122 bits (293), Expect = 3e-28
Identities = 62/116 (53%), Positives = 76/116 (65%)
Frame = +1
Query: 169 WNQNGDTNGGQEWSSLITGC*LS**NVILDRERIPERVVHAKGAGAFGYFEVTHDITKYS 348
WN N G+ L+ L DRERIPERVVHA+GA A G+FEVTHDI+ +
Sbjct: 26 WNNNSALTVGERGPILLEDYHLIEKLAQFDRERIPERVVHARGASAKGFFEVTHDISHLT 85
Query: 349 AAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNILP 516
A + G +TP+ VRFSTV E GS +T+RDPRGFAVKFYT +G +DLVGN +P
Sbjct: 86 CADFLRAPGVQTPVIVRFSTVVHERGSPETLRDPRGFAVKFYTREGNFDLVGNNMP 141
Score = 47.6 bits (108), Expect = 9e-06
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 513 PIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
P+FFIRD FP +H K +P T++++ DF + PE++H +LF
Sbjct: 141 PVFFIRDGMKFPDMVHAFKPSPKTNMQENWRIVDFFSHHPESLHMFSFLF 190
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 140 FITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMS 250
F TT SGAPV + TVG+ GP LL+D + +++++
Sbjct: 16 FWTTNSGAPVWNNNSALTVGERGPILLEDYHLIEKLA 52
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 120 bits (289), Expect = 1e-27
Identities = 55/86 (63%), Positives = 65/86 (75%)
Frame = +1
Query: 259 RERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADT 438
RERIPERVVHA+GA A G+FE THD+T + A S G +TP+ VRFSTV E GS +T
Sbjct: 68 RERIPERVVHARGASAKGFFECTHDVTDITCADFLRSPGAQTPVIVRFSTVIHERGSPET 127
Query: 439 VRDPRGFAVKFYTDDGVWDLVGNILP 516
+RDPRGFAVKFYT +G WDL+GN P
Sbjct: 128 IRDPRGFAVKFYTREGNWDLLGNNFP 153
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 513 PIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
P+FFIRD FP IH K NP +H+++ +DFL+ PE++H +LF
Sbjct: 153 PVFFIRDGIKFPDVIHAFKPNPRSHVQEYWRVFDFLSHHPESLHTFFFLF 202
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 146 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMS 250
TT +GAPV TVG GP LL+D + +++++
Sbjct: 30 TTNAGAPVWNDNEALTVGPRGPILLEDYHLIEKVA 64
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 544 NNVGSLIKKMGVYFQLNPTLHHQYRTLQQNLEGHEQYQQIHSLH 413
N + LI K+ QL H Q + LQQ+ H+Q Q ++ LH
Sbjct: 374 NKIDMLIAKIAHLQQLQQQGHSQQQQLQQSTISHQQAQSLNQLH 417
>02_04_0226 +
21073967-21074179,21074711-21074832,21074926-21075370,
21075453-21075559,21075656-21076463,21076691-21077128,
21077349-21077537,21077616-21077843,21077943-21078140,
21078304-21078379,21078452-21078593,21078749-21079238
Length = 1151
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +1
Query: 247 VILDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESG 426
V++D+ + E+V H G EV + K FE+ G R+P+A V
Sbjct: 566 VMVDQTLLREKVRHLGGEAGIERMEVA---LSEARTKFFEAKGNRSPLATTIKNVAATCS 622
Query: 427 SADT 438
S ++
Sbjct: 623 SGES 626
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 237 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGES 127
R L SC GP PT C ++I P+L +PG++
Sbjct: 109 RCLLSC--CGPMDPTSCTVLVIDLAYPELWYCRPGDN 143
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +1
Query: 310 GYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVG---GESGSADTVRDPRGFAVKFYTD 480
G + V + S+ +V S G+ T + ST G GES A VR P G K+
Sbjct: 152 GVYRVDLFTRQVSSPEVDWSYGEPTEMLTSGSTDGEGSGESAGAYIVRIPCGPRDKYLRK 211
Query: 481 DGVWDLVGNILPFSL*EIQHYSRVL 555
+ +W + + +L I + S+ L
Sbjct: 212 EALWPYLQEFVDGALAHILNMSKAL 236
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.9 bits (59), Expect = 7.8
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Frame = -1
Query: 494 SHTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTA--IGVL-LPMDSNTLAALYLVMS*V 324
S TPS+ T+ + S T S PLS T++ T G L P D +S
Sbjct: 589 SSTPSTSPLSTSTSKTSSTPSTSPLSSSTIKIPTTARTGELSTPTDKIPTTTRAGDLSTA 648
Query: 323 TSKYPKAPAPL-ACTTRSGIRSLS 255
TSK P AP TT S I S S
Sbjct: 649 TSKIPTAPGTSELSTTTSKISSTS 672
>02_04_0493 + 23435395-23436003
Length = 202
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 237 RKLTSCNKAGPFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL 112
R L SC GP PT C ++I P+L +PG++ V L
Sbjct: 111 RCLLSC--CGPMDPTSCTDLVIDLADPELWYCRPGDNHWVKL 150
>02_03_0141 -
15649188-15649274,15649376-15649421,15650476-15650606,
15652168-15652254,15652470-15652538,15652699-15652845,
15652923-15653003,15653122-15653223,15653392-15653429,
15653590-15653692,15653766-15653888,15654872-15654951,
15655356-15655504,15657794-15658010,15658379-15658448,
15659167-15659313,15659430-15659486,15663270-15663436,
15663479-15663569,15664044-15665081,15665580-15665695,
15666104-15667039,15667108-15667170,15667416-15667970,
15668293-15668305
Length = 1570
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -2
Query: 547 GNNVGSLIKKMGVYF-QLNPTLHHQYRTLQQNLEGHEQYQQIHS 419
G N GS K + +YF +PTL H+YR + +L +EQ QQ+ S
Sbjct: 351 GTN-GSNPKHLELYFYDDDPTLEHRYRRCRPDL--YEQDQQVVS 391
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,342,900
Number of Sequences: 37544
Number of extensions: 420267
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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