Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0833
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          30   2.0  
SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)               29   2.6  
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)                  29   3.4  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   28   6.0  
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)                 28   6.0  
SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)                   28   7.9  
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)               28   7.9  
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)                 28   7.9  

>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 613 SQNMSGSFRCVAGFLF*VWIKLGNNVGSLIKKMGVYFQLNPTLHHQYR 470
           S+++S +  C+ G+      K+G +  +LI      F  +P  HH YR
Sbjct: 18  SEDVSFTCTCLLGYTGSTCKKIGKDSANLISPKKTCFPYHPHYHHHYR 65


>SB_23885| Best HMM Match : Peptidase_S10 (HMM E-Value=0)
          Length = 446

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 540 LFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLFG 665
           +F  F   + ++       PD  WD++T+RP + H   +L+G
Sbjct: 12  VFTIFFFKESQSAVPRTSIPDEKWDYVTVRP-SAHMFWWLYG 52


>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
          Length = 1384

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 518 NGSIFPTKSHTPSSV*NFTAKPRGSRTVSADP 423
           N ++ PT ++T ++  NFT KP  + TV+A P
Sbjct: 204 NFTVTPTLNYTVAATPNFTVKPTLNYTVAATP 235


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 491  HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 372
            +TPS     TA PR SR  +    S PT + LTA   +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 385 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 498
           P+AV+  T+  + G    ++   G  V  Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164


>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
          Length = 465

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 8/31 (25%), Positives = 23/31 (74%)
 Frame = -3

Query: 654 KEVDGWSLVLRSKSPKTCLDLSDVLQGFSSE 562
           ++V G   +++ ++ K C+++SD+++G ++E
Sbjct: 13  RKVGGLGFLVKERASKPCVEISDIVKGSAAE 43


>SB_31410| Best HMM Match : PDZ (HMM E-Value=1.1e-15)
          Length = 556

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 558 HTQKRNPATHLKDPDMFW 611
           HT+ RNP T +++P+ +W
Sbjct: 531 HTRIRNPLTRIRNPEPYW 548


>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
          Length = 385

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 317 KYPKAPAPLACTTRSGIRSLSRMTFHQES*HPVIRLDHSCPPFVSP 180
           KYP+  + +    +  + S    TFHQ+  H  +R D   PP  +P
Sbjct: 236 KYPQDVSGIYQLVQGQLESRDMQTFHQQLPHLALRHDLPKPPSKNP 281


>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
          Length = 261

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 138 PGESFKVFL*LMSWSVAGSLEAILYVP 58
           P +SF   L +M+W V GSL  IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,297,930
Number of Sequences: 59808
Number of extensions: 488207
Number of successful extensions: 1223
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)