Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0833
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20630.1 68414.m02581 catalase 1 identical to catalase 1 GI:2...   122   2e-28
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P...   122   3e-28
At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to c...   107   5e-24
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c...   107   5e-24
At3g14205.1 68416.m01795 phosphoinositide phosphatase family pro...    31   0.70 
At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family pr...    30   1.6  
At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family pr...    29   3.8  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    29   3.8  
At1g17030.1 68414.m02069 expressed protein                             28   6.6  
At1g15240.1 68414.m01824 phox (PX) domain-containing protein wea...    28   6.6  
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    27   8.7  

>At1g20630.1 68414.m02581 catalase 1 identical to catalase 1
           GI:2511725 from [Arabidopsis thaliana]
          Length = 492

 Score =  122 bits (295), Expect = 2e-28
 Identities = 63/116 (54%), Positives = 75/116 (64%)
 Frame = +1

Query: 169 WNQNGDTNGGQEWSSLITGC*LS**NVILDRERIPERVVHAKGAGAFGYFEVTHDITKYS 348
           WN N     G     L+    L       DRERIPERVVHA+GA A G+FEVTHDIT+ +
Sbjct: 26  WNNNSSLTVGTRGPILLEDYHLLEKLANFDRERIPERVVHARGASAKGFFEVTHDITQLT 85

Query: 349 AAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNILP 516
           +A      G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +G +DLVGN  P
Sbjct: 86  SADFLRGPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFP 141



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +3

Query: 513 PIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
           P+FF+RD   FP  +H  K NP +H+++     DF +  PE++H   +LF
Sbjct: 141 PVFFVRDGMKFPDMVHALKPNPKSHIQENWRILDFFSHHPESLHMFSFLF 190



 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%)
 Frame = +2

Query: 128 DSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSS 253
           DSP F TT SGAPV    +  TVG  GP LL+D + L+++++
Sbjct: 13  DSP-FFTTNSGAPVWNNNSSLTVGTRGPILLEDYHLLEKLAN 53


>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
           SP:P25819, GI:17865693 from [Arabidopsis thaliana]
          Length = 492

 Score =  122 bits (293), Expect = 3e-28
 Identities = 74/169 (43%), Positives = 94/169 (55%), Gaps = 2/169 (1%)
 Frame = +1

Query: 169 WNQNGDTNGGQEWSSLITGC*LS**NVILDRERIPERVVHAKGAGAFGYFEVTHDITKYS 348
           WN N     G     L+    L       DRERIPERVVHA+GA A G+FEVTHDI+  +
Sbjct: 26  WNNNSSMTVGPRGPILLEDYHLVEKLANFDRERIPERVVHARGASAKGFFEVTHDISNLT 85

Query: 349 AAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNILP-FSL 525
            A    + G +TP+ VRFSTV  E GS +T+RDPRGFAVKFYT +G +DLVGN  P F +
Sbjct: 86  CADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFI 145

Query: 526 *EIQHYSRVLSILRRETLQHI*KIQTCFGTF*P*DQRP-SINFFTCLED 669
            +   +  ++  L+     HI +       F      P S+N FT L D
Sbjct: 146 RDGMKFPDMVHALKPNPKSHIQENWRILDFF---SHHPESLNMFTFLFD 191



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/42 (42%), Positives = 28/42 (66%)
 Frame = +2

Query: 128 DSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSS 253
           +SP F TT SGAPV    +  TVG  GP LL+D + ++++++
Sbjct: 13  NSP-FFTTNSGAPVWNNNSSMTVGPRGPILLEDYHLVEKLAN 53


>At1g20620.2 68414.m02577 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 427

 Score =  107 bits (258), Expect = 5e-24
 Identities = 52/86 (60%), Positives = 63/86 (73%)
 Frame = +1

Query: 259 RERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADT 438
           RERIPERVVHA+G  A G+FEVTHDI+  + A    + G +TP+ VRFSTV  E  S +T
Sbjct: 56  RERIPERVVHARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPET 115

Query: 439 VRDPRGFAVKFYTDDGVWDLVGNILP 516
           +RD RGFAVKFYT +G +DLVGN  P
Sbjct: 116 MRDIRGFAVKFYTREGNFDLVGNNTP 141



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +3

Query: 510 TPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
           TP+FFIRD   FP  +H  K NP T++++     D+++  PE++    ++F
Sbjct: 140 TPVFFIRDGIQFPDVVHALKPNPKTNIQEYWRILDYMSHLPESLLTWCWMF 190



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +2

Query: 110 YKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSLT 259
           Y+ +   +  F TT  GAPV    +  T+G+ GP LL+D + ++++++ T
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFT 55


>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
           catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
           thaliana]; identical to catalase 3 (SEN2) mRNA, partial
           cds GI:3158369
          Length = 492

 Score =  107 bits (258), Expect = 5e-24
 Identities = 52/86 (60%), Positives = 63/86 (73%)
 Frame = +1

Query: 259 RERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADT 438
           RERIPERVVHA+G  A G+FEVTHDI+  + A    + G +TP+ VRFSTV  E  S +T
Sbjct: 56  RERIPERVVHARGISAKGFFEVTHDISNLTCADFLRAPGVQTPVIVRFSTVVHERASPET 115

Query: 439 VRDPRGFAVKFYTDDGVWDLVGNILP 516
           +RD RGFAVKFYT +G +DLVGN  P
Sbjct: 116 MRDIRGFAVKFYTREGNFDLVGNNTP 141



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +3

Query: 510 TPIFFIRDPTLFPSFIHTQKRNPATHLKDPDMFWDFLTLRPETIHQLLYLF 662
           TP+FFIRD   FP  +H  K NP T++++     D+++  PE++    ++F
Sbjct: 140 TPVFFIRDGIQFPDVVHALKPNPKTNIQEYWRILDYMSHLPESLLTWCWMF 190



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = +2

Query: 110 YKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSLT 259
           Y+ +   +  F TT  GAPV    +  T+G+ GP LL+D + ++++++ T
Sbjct: 6   YRPSSAYNAPFYTTNGGAPVSNNISSLTIGERGPVLLEDYHLIEKVANFT 55


>At3g14205.1 68416.m01795 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain;  identical to SAC domain protein 2
           (SAC2) GI:31415720
          Length = 808

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 487 LHHQYRTLQQNLEGHEQYQQIHSLHQ-LLRI*QQSVSFCLWTQIL 356
           +H   R L  N+EGH  Y+ +   ++ L R  + +V  C+WT  L
Sbjct: 176 MHTLQRNLSNNVEGHTYYESMFVWNEYLTRRIRNNVKDCMWTVAL 220


>At3g59480.1 68416.m06636 pfkB-type carbohydrate kinase family
           protein contains Pfam profile: PF00294 pfkB family
           carbohydrate kinase
          Length = 326

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 TLKDSPGFITTKSGAPVGIKTAIQTVG 199
           +L D+PGFI    GAP  +  AI  +G
Sbjct: 29  SLADAPGFIKAPGGAPANVAIAISRLG 55


>At1g06020.1 68414.m00630 pfkB-type carbohydrate kinase family
           protein similar to fructokinase GI:2102693 from
           [Lycopersicon esculentum]
          Length = 345

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 119 TLKDSPGFITTKSGAPVGIKTAIQTVG 199
           +L +SPGF+    GAP  +  A+  +G
Sbjct: 29  SLSESPGFLKAPGGAPANVAIAVSRLG 55


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 157 WSSCWNQNGDTNGGQEWS 210
           WS  WN NG T    EWS
Sbjct: 868 WSDGWNNNGGTKEKNEWS 885


>At1g17030.1 68414.m02069 expressed protein
          Length = 502

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 493 PTLHHQYRTLQQNLEGH 443
           P++HH+Y +L  N EGH
Sbjct: 190 PSMHHEYTSLVDNEEGH 206


>At1g15240.1 68414.m01824 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 706

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = -2

Query: 535 GSLIKKMGVYFQLNPTLHHQYRTLQQNLEGHEQYQQI 425
           G   K +GV  +++  L +  R+L++  +GHE+YQQ+
Sbjct: 509 GRTKKNLGVS-RIHHPLENSGRSLKKTSKGHERYQQV 544


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 481 HQYRTLQQNLEGHEQYQQIHSLHQLLRI*QQ 389
           HQ +  QQ  + H Q QQ++ L Q  R+ QQ
Sbjct: 359 HQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQ 389


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,510
Number of Sequences: 28952
Number of extensions: 344428
Number of successful extensions: 906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)