Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0832
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 31 0.18
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 28 0.95
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 27 2.2
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.2
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 27 2.9
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 5.1
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 6.7
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 6.7
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 8.8
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.8
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 30.7 bits (66), Expect = 0.18
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +1
Query: 229 ASEVVNFDDLDNFCRSHGQVPATHLSNVCLINFRW*F---LRLPWLSRVTGNQGSIPERE 399
+ E+++F + G + L C+IN W LRL +L + NQ S E++
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAECMINETWPVDRALRLQFLIQQRNNQSSNEEQK 302
Query: 400 PEKRLP 417
EKR+P
Sbjct: 303 QEKRVP 308
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 518 SDYGPRKSPVSLFFVTTSPCREWVICAPAAFLGCGSRFSGSLSG 387
+D+GP S +TT ++ + A L G+RF G+L G
Sbjct: 418 ADHGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGGALDG 461
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 289 VLDHAICKSYPDHQN*RLRTRGPPSIGFDLIKALIP 182
++D K Y H + L + PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 27.1 bits (57), Expect = 2.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 476 RKITIRDSYEARNRNEYTLNILTRTIGGQV 565
+KI +R +Y+ + EY L+++ +GG +
Sbjct: 220 KKIEVRLNYQIDQKKEYLLSLIKDNLGGNI 249
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 346 LPWLSRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGEVVTKN 483
+P +S V + IPER+ + L P + H EVV +N
Sbjct: 757 VPCISGVMLHSKIIPERKNSEFLSFPTSQQECLLVHDNQAEVVVQN 802
>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 426 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 328
P MW P N+ + YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 424 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 323
L ++ S+ P + PD P T+ V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 566 RLALQLSSLKYLKCTHSDY 510
R+ L L S Y KC H DY
Sbjct: 1125 RIVLHLFSFFYWKCQHDDY 1143
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 612 FSIRYWSWNYRGCWHQTCPPIVLVKIFKVYSFRLRA 505
F Y WNY G +Q P + KV+ LRA
Sbjct: 96 FKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRA 131
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 78 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 182
N IY+ +F ++S++ + + I L +RT++SD
Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,317
Number of Sequences: 5004
Number of extensions: 52134
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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