Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0831
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           25   4.1  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   7.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   7.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   9.4  

>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 336 KHGVKKTCFYLHNIKKKNIVILVTYKSFKSTME 238
           K  ++KT F LHN  K+N+    +   FK   E
Sbjct: 194 KEALEKTIFPLHNWTKENVKKQASSAGFKEIAE 226


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 439 INVTILCNIHIFIYNAKYTETIWVC 365
           I V I C  HI +  AK  +T+ +C
Sbjct: 145 IAVFIFCIFHIAVATAKDIQTVMIC 169


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/52 (28%), Positives = 20/52 (38%)
 Frame = -2

Query: 280 CDTCYLQKF*KHDGNLSYTLISIGEIIHLSKPDKNKNKNITXSYIKVP*QPL 125
           C +C       H   L  T       +HLSKP+K K  N     ++    PL
Sbjct: 236 CSSCVSHVHHDHHSMLRLTREISASPLHLSKPEKPKVLNFDFKLVEDSILPL 287


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 269 TSITMFFFFMLCK*KHVFLTP 331
           TS+   FFF LC+ KH+   P
Sbjct: 125 TSLHFNFFFRLCRHKHLLDIP 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,131
Number of Sequences: 5004
Number of extensions: 34326
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)