Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0831
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135...    29   2.3  
07_03_0714 + 20885468-20885473,20885625-20885715,20886469-208865...    27   7.0  
02_05_1350 - 35850020-35850073,35850430-35850519,35850963-358509...    27   9.2  

>03_02_0750 +
           10909130-10909616,10912257-10912916,10913139-10913544,
           10914376-10914757,10914918-10915679,10916106-10916165,
           10916695-10917105
          Length = 1055

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 448 INFINVTILCNIHIFIYNAKYTETIWVC 365
           ++ IN+ ++ N H+ IY  +   T WVC
Sbjct: 902 VSRINIVLVHNHHLCIYTREEDSTAWVC 929


>07_03_0714 +
           20885468-20885473,20885625-20885715,20886469-20886537,
           20887142-20887251,20887694-20887786
          Length = 122

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 184 PAYSNV*SHQY*SMCKISFHRAFKTFVSNKYHNVFFFYVMQVEACFFNAVL 336
           P + N+ +    ++  +   R+F + VS KY N+FF+     +A    AV+
Sbjct: 53  PTFGNIINFNVGALVDLDIPRSFWSRVSGKYGNMFFWKEKGEDASIEAAVM 103


>02_05_1350 -
           35850020-35850073,35850430-35850519,35850963-35850987,
           35851390-35851430,35852089-35852108,35852999-35853113,
           35853114-35853259,35853535-35853586
          Length = 180

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 368 YPYGFCVFCIIYKNMYVTEYCYID 439
           YP G+C   ++ +  Y  E C +D
Sbjct: 15  YPKGYCAGAVVQQCRYACELCQVD 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,150,817
Number of Sequences: 37544
Number of extensions: 168544
Number of successful extensions: 252
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)