Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0831
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  

>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 312 FYLHNIKKKNIVILVTYKSFKSTMETYLT 226
           F+LH+IK ++  +L ++ SF +T + ++T
Sbjct: 212 FFLHHIKTEHYGMLGSFASFTATRQVFVT 240


>SB_57867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 142 VP*QPLGKKNQNRNTVW 92
           +P Q LGKKN  RN++W
Sbjct: 414 LPEQTLGKKNARRNSMW 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,607
Number of Sequences: 59808
Number of extensions: 228907
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)