Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0831
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42800.1 68418.m05213 dihydroflavonol 4-reductase (dihydrokae...    29   1.5  
At4g18260.1 68417.m02711 cytochrome B561-related related to cyto...    29   1.9  
At1g03550.1 68414.m00336 secretory carrier membrane protein (SCA...    28   3.4  
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea...    27   7.7  
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH...    27   7.7  

>At5g42800.1 68418.m05213 dihydroflavonol 4-reductase
           (dihydrokaempferol 4-reductase) (DFR) nearly identical
           to GI:166686
          Length = 382

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 442 FINVTILCNIHIFIYNAKYTETIWVCTSCTLTL 344
           ++++  LCN HIF+Y     +  ++C+S   T+
Sbjct: 228 YVHLDDLCNAHIFLYEQAAAKGRYICSSHDATI 260


>At4g18260.1 68417.m02711 cytochrome B561-related related to
           cytochrome b-561 (GI:20345443) [Mus musculus]; multidrug
           resistance protein, Homo sapiens, PIR2:S71841
          Length = 545

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 411 IFLYIMQNTQKPYGYVLVVR*P*AHKHGVK-KTCFYLHNIKKKNIVILVT 265
           I L++      P G + +     AH++G+K K  FYLH I +   V+L T
Sbjct: 66  ILLWVSMGFLMPVGILFIRMANKAHENGIKVKVFFYLHVIFQILAVVLAT 115


>At1g03550.1 68414.m00336 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 283

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 241 HRAFKTFVSNKYHNVFFFYVMQVEACFFNAV 333
           +RA +T  + K+   FFFYV  +  C F AV
Sbjct: 175 YRATRTDSALKFGAFFFFYVFHIAFCGFAAV 205


>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to photomorphogenesis repressor PnCOP1
           (GI:11127996) [Ipomoea nil]
          Length = 385

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 418 NIHIFIYNAKYTETIWVC 365
           N  +F+Y+ ++ E +WVC
Sbjct: 321 NNQVFVYDKRWEEPVWVC 338


>At5g15250.1 68418.m01786 FtsH protease, putative similar to
           FtsH-like protein Pftf precursor GI:4325041 from
           [Nicotiana tabacum]
          Length = 687

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 339 HKHGVKKTCFYLHNIKKKNIVILVTYKSFKSTMETYLTH 223
           HK  +K    + H   K+N++ L T   F S + T L H
Sbjct: 40  HKPSLKTQILH-HKFTKRNLLSLTTALGFTSALGTVLAH 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,907,585
Number of Sequences: 28952
Number of extensions: 158380
Number of successful extensions: 276
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)