Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0829
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.3
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 3.3
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.3
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 3.3
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 3.3
AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical ... 28 5.8
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 375 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 262
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 591 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 689
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 545 SRTKRNRHDLTARRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 372
S KR L RRS R S + D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 371 NARTSTRPGTGRIRFPSKPDT 309
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 545 SRTKRNRHDLTARRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 372
S KR L RRS R S + D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 371 NARTSTRPGTGRIRFPSKPDT 309
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 591 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 689
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 545 SRTKRNRHDLTARRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 372
S KR L RRS R S + D E + +R + +KI LT NE+
Sbjct: 506 SMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 563
Query: 371 NARTSTRPGTGRIRFPSKPDT 309
TS++PG R+ P+K DT
Sbjct: 564 RGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 29.1 bits (62), Expect = 3.3
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = -2
Query: 545 SRTKRNRHDLTARRSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKI--LTR*NEH 372
S KR L RRS R S + D E + +R + +KI LT NE+
Sbjct: 475 SMKKRIARALIRRRSTT--RPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNEN 532
Query: 371 NARTSTRPGTGRIRFPSKPDT 309
TS++PG R+ P+K DT
Sbjct: 533 RGETSSQPGRDRLAPPNKTDT 553
>AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical
protein Y37E11B.3 protein.
Length = 157
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 317 PDTPRSSEPILIPKLRIQFADSLTYIIL-STRGSSPWRPAA 198
PDTP +S+P+L K D L I S R SSP R AA
Sbjct: 8 PDTPTTSQPLLSNKQTSFVVDDLEERIRESARISSPKRAAA 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,981,229
Number of Sequences: 27780
Number of extensions: 363770
Number of successful extensions: 1124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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