Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0829
(720 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 23 2.2
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 23 2.2
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 23 2.2
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 23 2.2
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 23 2.2
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 23 2.2
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 23 2.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.8
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 6.7
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 22 6.7
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 23.4 bits (48), Expect = 2.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRS 258
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + +RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRS 258
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 328 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 426
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 328 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 426
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -1
Query: 90 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 7
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.8 bits (44), Expect = 6.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 563 RTESCRSRTKRNRHDLTARRSAEGRRTRVRIQS 465
RT SC SR + RH+ +G R+ R +S
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRS 258
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,286
Number of Sequences: 438
Number of extensions: 5155
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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