Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0828
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.1  
03_05_0183 - 21681673-21682524                                         29   2.8  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.8  
07_03_1086 + 23858419-23859423,23859527-23859610                       28   4.9  
01_05_0188 + 19055421-19056857                                         28   4.9  
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490...    28   6.5  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.5  
07_03_0414 + 17892133-17893590                                         27   8.5  

>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 197 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 99
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 408 SQAFIATLLFDPSMSALPIIAKQNSPS 328
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 469 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 362
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -3

Query: 239 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAESGKDMLT 75
           CD N A      +   LVHAL  AA  A   +A   L         A AS+  +G   L 
Sbjct: 135 CDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRAGAIPLL 194

Query: 74  VEPRESGGSK 45
           V   E+GG++
Sbjct: 195 VSLLETGGAR 204


>01_05_0188 + 19055421-19056857
          Length = 478

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 483 RPCFRSPYATEHLDQASFCPFAPREVSVLAELAL 584
           RPC+R+P+AT  L+ A   P+   E SV   + L
Sbjct: 80  RPCYRAPFAT-CLEHAHLMPYLVDEESVAFAIRL 112


>09_02_0535 -
           10346395-10346705,10347100-10347175,10348931-10349070,
           10349294-10349578,10349677-10349718,10350963-10351461,
           10351557-10351723,10352128-10352412,10352695-10352836
          Length = 648

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 177 ECMNQMSETAVPLVLSSI-TIATTSHQRVKLTCLTTV 284
           +C  QM++  +P+ +SSI  +ATT  Q+ K   L +V
Sbjct: 413 DCSIQMTKDGIPICMSSIDLLATTDVQQSKFCSLLSV 449


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 98  RLGWLRP*RRSGIIP 142
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>07_03_0414 + 17892133-17893590
          Length = 485

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +2

Query: 281 GLIPAHVPF*WVNNPTL-GEFCFAMIGRADIEGSKSNVAMNAWLPQ 415
           GL+ A  PF WV  P + G    A +  A     KS   +  W PQ
Sbjct: 306 GLVAAGYPFLWVLRPDMVGASQSAALREAVAAAGKSKARVVEWAPQ 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,668
Number of Sequences: 37544
Number of extensions: 345037
Number of successful extensions: 923
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)