Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0827
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    27   9.4  
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    27   9.4  

>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 373 LPMRHFLQLALWLSYCI*KLFSANNFKDCTSA 468
           LPM   L LALWL+ C+  ++ +NN     SA
Sbjct: 248 LPMAIILFLALWLTLCL--MYCSNNTAKALSA 277


>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 254  LLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTILMTSYI 132
            L  + LD +TQSQ G+LL   A++L ++F+ +G    T  +
Sbjct: 1746 LSMYLLDPQTQSQQGRLL--AALALGDLFQNEGLARSTDAV 1784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,549
Number of Sequences: 37544
Number of extensions: 213677
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)