Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0826
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su... 35 0.008
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 30 0.18
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.2
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.2
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 27 2.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 3.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 5.1
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.1
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 25 6.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.7
>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 366
Score = 34.7 bits (76), Expect = 0.008
Identities = 19/50 (38%), Positives = 25/50 (50%)
Frame = +3
Query: 6 AEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGV 155
++E ED+ LP G A+ R G T+VG V LE AD + GV
Sbjct: 218 SKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGV 267
Score = 34.3 bits (75), Expect = 0.011
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +1
Query: 268 GFGAELAATVQE-ECFLHLEAPIARVTGWDAPFPH 369
G G+E+AA + E + F +L+AP+ RV+ D P P+
Sbjct: 306 GIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPY 340
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 327 RLQVQKTFLLHGGGELGAEPRRERASWDIKHRPVFFTELHTVSSS 193
R+Q K LL G G LG R SW ++H V F + TVS S
Sbjct: 332 RIQNSKCLLL-GAGTLGCGVARNLLSWGVRH--VTFVDYSTVSYS 373
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 21 VEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGVTVTSSICSRSCP 191
+ED TLP+ Q +VG TL G+ ++ A + +G VTS + S P
Sbjct: 253 MEDLTLPVDIEQNPKVGRKITLYGYLHGTNLPKHDASVHIPGVGDFVTSDVSSLEDP 309
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -2
Query: 242 SSTAQFSSRNCTR-SPRPRAGSTADR*RHSDAELVPRHVCYLQQHVN--LRAPAHQRGRG 72
S + Q TR S P T HS A L R+ + QH + LR+P RGRG
Sbjct: 73 SHSGQSEKLMSTRTSHSPYISPTMSYTNHSPANLT-RNSSFNHQHYSTTLRSPPSMRGRG 131
Query: 71 AD 66
D
Sbjct: 132 ID 133
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 347 PVTRAIGASKCRKHSSCTVAASSAPNPDVSGP 252
PV+RAI AS+ SS + S P+ VS P
Sbjct: 186 PVSRAIAASEISPSSSPQLLTSFLPSGSVSNP 217
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 164 VIDLQSILPWDEETVCNSVKKTG 232
V D++ ILP +T NSVK TG
Sbjct: 533 VTDIKEILPSQHDTPHNSVKLTG 555
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 296 TVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPR 195
+VAAS P+ +GP +S+TA S TR R
Sbjct: 179 SVAASPNPSTPSNGPAPVSTTATPSRNPVTRLQR 212
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 308 HSSCTVAASSAPNPDVSGPRGISSTAQFSSR 216
++ C V + +A PD + P I S ++FSSR
Sbjct: 884 YTRCEVKSINAFKPDTTLPPDIISDSRFSSR 914
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 235 VLDIPRGPLTSGFGAELAATVQEECF 312
+L I RGPL F ++L +++ CF
Sbjct: 1298 LLVIRRGPLVKQFASKLLQSLKSSCF 1323
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -2
Query: 293 VAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTADR*RHS 156
+ S + S P +S ++R+ +SPR GST + HS
Sbjct: 116 ITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPKSSHS 161
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,828,914
Number of Sequences: 5004
Number of extensions: 32432
Number of successful extensions: 104
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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