Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0826
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 78 4e-15
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 41 7e-04
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 39 0.002
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 36 0.015
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 36 0.015
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42... 31 0.55
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 30 0.96
01_06_0084 + 26286463-26288259 29 1.7
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 29 2.9
06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759... 28 3.9
05_05_0230 - 23476919-23477372,23477656-23477695,23478578-234787... 28 3.9
01_06_0983 - 33583784-33583994,33584060-33584919 28 3.9
09_02_0456 - 9525067-9525422,9525679-9528226 28 5.1
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485... 28 5.1
12_01_0249 + 1850443-1851030 27 6.8
10_08_0048 - 14441540-14441620,14442044-14442111,14442275-144424... 27 6.8
09_06_0081 + 20745627-20748144,20748211-20748308 27 6.8
06_03_0338 - 19685656-19686282 27 6.8
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 27 6.8
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 27 8.9
05_01_0351 + 2750253-2751042,2751951-2751958,2752122-2752149,275... 27 8.9
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 78.2 bits (184), Expect = 4e-15
Identities = 33/61 (54%), Positives = 43/61 (70%)
Frame = +1
Query: 256 PLTSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPHVFEPFYLPDKWRCYQALIQLIN 435
P+T GFGAE+AA++ E CF LEAP+ARV G D PFP V+E FY+P K + A+ +N
Sbjct: 371 PITGGFGAEIAASITERCFQRLEAPVARVCGLDTPFPLVYETFYMPTKNKVLDAIKATVN 430
Query: 436 Y 438
Y
Sbjct: 431 Y 431
Score = 54.8 bits (126), Expect = 4e-08
Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 AAEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVA-DMARD 143
A EEVP EDY LPL +A+ +R G+ TL+GWG Q+ VL E D A+D
Sbjct: 287 AVEEVPEEDYMLPLSEAEVIRKGSDITLIGWGAQLAVLEEACEDAAKD 334
Score = 51.6 bits (118), Expect = 4e-07
Identities = 20/33 (60%), Positives = 29/33 (87%)
Frame = +2
Query: 158 CDVIDLQSILPWDEETVCNSVKKTGRCLISHEA 256
C++IDL++++PWD+ETV SV KTG+ L+SHEA
Sbjct: 338 CELIDLRTLIPWDKETVEASVSKTGKLLVSHEA 370
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 40.7 bits (91), Expect = 7e-04
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 268 GFGAELAATVQEECFLHLEAPIARVTGWDAPFPH 369
G GAE+ +V EE F +L+AP+ R+ G D P P+
Sbjct: 310 GIGAEICMSVVEESFEYLDAPVERIAGADVPMPY 343
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 12 EVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADM 134
EV + LP+GKA+ R G T+ + V L+ AD+
Sbjct: 225 EVLDSSFALPIGKAKIEREGKDVTITAYSKMVGYALQAADI 265
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 39.1 bits (87), Expect = 0.002
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 268 GFGAELAATVQEECFLHLEAPIARVTGWDAPFPH 369
G GAE+ +V E+ F +L+AP+ R+ G D P P+
Sbjct: 305 GVGAEICMSVVEDSFEYLDAPVERIAGADVPMPY 338
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 161 DVIDLQSILPWDEETVCNSVKKTGRCLISHE 253
+VID++S+ P+D T+ NS+KKT R LI E
Sbjct: 283 EVIDIRSLKPFDLHTIGNSIKKTHRVLIVEE 313
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 262 TSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPH 369
T G GA L + + + + +L+API ++ D P P+
Sbjct: 317 TGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPY 352
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 36.3 bits (80), Expect = 0.015
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 161 DVIDLQSILPWDEETVCNSVKKTGRCLISHE 253
+VID++S+ P+D T+ NS+KKT R LI E
Sbjct: 300 EVIDIRSLKPFDLHTIGNSIKKTHRVLIVEE 330
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 262 TSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPH 369
T G GA L + + + + +L+API ++ D P P+
Sbjct: 334 TGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPY 369
>02_01_0057 +
420812-421556,422473-422597,422622-422912,423357-423555,
423737-423800,423894-423957,424055-424135,424334-424420,
424492-424500
Length = 554
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -1
Query: 93 SPPAWPRRRLLTSAPFPAVACNPRRVLLRLP 1
SP + RRR L P P VA P R+L+R+P
Sbjct: 268 SPASRLRRRRLLPRPLPVVASVPLRLLVRIP 298
>02_03_0300 + 17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 30.3 bits (65), Expect = 0.96
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = -2
Query: 332 IGASKCRKHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTADR*RHSD 153
+ A C KHSS + + + DV P GI+S + S++ + P+ R + +H D
Sbjct: 1165 VQAKTCEKHSSSNLCGNMNSHSDV--PLGIASGSIGKSKHTEKRPKARNVRGRTKMKHYD 1222
Query: 152 AELVPRHVCYLQQHVN 105
+ + + V L H N
Sbjct: 1223 WDNLRKEV--LHNHGN 1236
>01_06_0084 + 26286463-26288259
Length = 598
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +3
Query: 9 EEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVH 110
E VPV D+T+ LRV AAATL G QVH
Sbjct: 221 EAVPVNDFTVSC----ILRVCAAATLFELGAQVH 250
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 28.7 bits (61), Expect = 2.9
Identities = 19/72 (26%), Positives = 30/72 (41%)
Frame = -2
Query: 284 SSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTADR*RHSDAELVPRHVCYLQQHVN 105
+S DV GP + +++ T++ PR H+ + P Y Q HV
Sbjct: 476 ASGSTEDVFGPSQLGGAPPLQTQDQTQATPPRD-------THATRAVPPDRFTYSQDHVR 528
Query: 104 LRAPAHQRGRGA 69
+A +RGR A
Sbjct: 529 AQARRTKRGRSA 540
>06_03_0805 +
24775346-24775543,24775643-24775858,24775930-24775970,
24776510-24776551,24777019-24777055,24779796-24780092
Length = 276
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 111 VLLEVADMARDKLGVTVTSSICSRSCPGTRRPCAI 215
V L AR GVT T IC RS P + R C++
Sbjct: 101 VFLNGRPQARPGKGVTNTCEICCRSLPDSFRFCSL 135
>05_05_0230 -
23476919-23477372,23477656-23477695,23478578-23478700,
23479114-23479151,23479289-23479674,23479875-23481053,
23481805-23481928,23482733-23482779
Length = 796
Score = 28.3 bits (60), Expect = 3.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 335 AIGAS-KCRKHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRA 186
A+G S + SS + SS P +G R + ++ SSR + PRPRA
Sbjct: 274 AVGRSPSVGRSSSISSLTSSINRPAANGGRNSAPSSAPSSRPSSPGPRPRA 324
>01_06_0983 - 33583784-33583994,33584060-33584919
Length = 356
Score = 28.3 bits (60), Expect = 3.9
Identities = 20/77 (25%), Positives = 28/77 (36%)
Frame = -2
Query: 350 QPVTRAIGASKCRKHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTAD 171
+P + GA K + A + P D PR ++ A C S P D
Sbjct: 133 RPAAHSAGADYVAKFNRAIAAMKALPADD---PRSFAAQASVHCAYCDGSYSPDGFPGLD 189
Query: 170 R*RHSDAELVPRHVCYL 120
H+ +P H CYL
Sbjct: 190 LQVHNSWLFMPFHRCYL 206
>09_02_0456 - 9525067-9525422,9525679-9528226
Length = 967
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 387 VERFEDMREGRVPAGHSSYRRLQVQKTFLLHGGGEL 280
+E F + GR+PAG ++LQ + H GE+
Sbjct: 255 IELFSNQLSGRIPAGLGGLKKLQQLDISMNHISGEI 290
>07_01_0646 +
4853546-4853623,4853732-4855357,4855467-4855751,
4856131-4856277
Length = 711
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 36 LPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGVTVT 164
L +GK + L G L+G+GT V ++ A+ ++ G+ VT
Sbjct: 567 LEVGKGRVLVGGNRVALLGYGTMVQACMKAAEALKEH-GIYVT 608
>12_01_0249 + 1850443-1851030
Length = 195
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -2
Query: 338 RAIGASKCR---KHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTAD 171
R GA C SS ++AASS+ + + PR + T+ +S + T+ P A + D
Sbjct: 28 RRSGAKSCSFGSTTSSSSLAASSSDDSAATTPRSVLPTSAAASSSGTKKPAAAAVTRED 86
>10_08_0048 -
14441540-14441620,14442044-14442111,14442275-14442493,
14442506-14444508,14447541-14448410,14448533-14448576,
14449920-14450093
Length = 1152
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 24 EDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMARDKLGVTVTSSICSRSC 188
ED + + + ++V A +GW Q H LL+ + ++G T+ SS+ C
Sbjct: 831 EDSPVSVESSFVVQVINACISLGWLEQAHDLLDEMRFSGIRVGSTIYSSLLKAYC 885
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 27.5 bits (58), Expect = 6.8
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Frame = -2
Query: 287 ASSAPNPDVSGPRGIS---STAQFS---SRNCTRSPRPRAGSTADR*RHSDA 150
ASSAP P V+ PRG + +TA++S S + S PRA STA H+ A
Sbjct: 593 ASSAPAPPVAAPRGWTVSPTTARYSFSDSGASSSSAAPRA-STAPLALHAPA 643
>06_03_0338 - 19685656-19686282
Length = 208
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -3
Query: 415 LGSSATCPVSRK--VRRHAGRARPSRSLELSAPP 320
LGS ATCPV R+ R+H G P E P
Sbjct: 173 LGSHATCPVCRRRVERKHKGGVLPPMPPEPETEP 206
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -2
Query: 326 ASKCRKHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRS 201
+S C S+C+ ++SSA NP SG SS + FSS T S
Sbjct: 65 SSSCEA-STCS-SSSSAFNPGSSGAASTSSLSAFSSSASTAS 104
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 36 LPLGKAQTLRVGAAATLVGWGTQVHVLLEVADMA-RDKLGVTVTSS 170
L +GK + L G L+G+G+ V L A + R L VTV +
Sbjct: 736 LEVGKGRVLLEGERVALLGYGSAVQYCLAAASLVERHGLKVTVADA 781
>05_01_0351 +
2750253-2751042,2751951-2751958,2752122-2752149,
2754692-2754775,2755780-2757548
Length = 892
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 253 LVGYQAPPSFLHGIAHGLLVPGQDRLQ 173
L G PPS+ H A G++ PGQ + Q
Sbjct: 800 LPGPPLPPSYQHRAAGGVVFPGQHQQQ 826
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,264,977
Number of Sequences: 37544
Number of extensions: 277079
Number of successful extensions: 1067
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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