Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0826
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14) 101 3e-22
SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 1e-04
SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16) 29 1.7
SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31) 29 1.7
SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9) 29 3.0
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.0
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11) 28 4.0
SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08) 28 5.3
SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17) 27 6.9
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0) 27 6.9
SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0) 27 6.9
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 27 6.9
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 27 6.9
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 27 9.2
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 27 9.2
SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 27 9.2
>SB_27708| Best HMM Match : Transketolase_C (HMM E-Value=2.4e-14)
Length = 226
Score = 101 bits (243), Expect = 3e-22
Identities = 39/59 (66%), Positives = 50/59 (84%)
Frame = +1
Query: 262 TSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPHVFEPFYLPDKWRCYQALIQLINY 438
T GFG E+A+TVQ+ CFL LEAPI RV GWD PFPH+ EPFYLPDKWRC++A+ ++I++
Sbjct: 168 TGGFGGEIASTVQDRCFLSLEAPIQRVCGWDTPFPHILEPFYLPDKWRCFEAVKKVISF 226
>SB_50675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 268 GFGAELAATVQE-ECFLHLEAPIARVTGWDAPFPH 369
G GAE+AATV E E F L+API RVTG D P P+
Sbjct: 132 GVGAEIAATVMESEAFDFLDAPIIRVTGADIPMPY 166
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 6 AEEVPVEDYTLPLGKAQTLRVGAAATLVGWGTQVHVLLEVA 128
++E D+ +P+GKA+ R G+ TLV V L+ A
Sbjct: 45 SDEAMSADFLVPIGKAKIERPGSHITLVAHSRPVETCLQAA 85
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +2
Query: 161 DVIDLQSILPWDEETVCNSVKKT 229
+V++L+SI P D + + +SVKKT
Sbjct: 96 EVLNLRSIRPMDTQAIVDSVKKT 118
>SB_23015| Best HMM Match : WW (HMM E-Value=2.8e-16)
Length = 678
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -1
Query: 381 RFEDMREGRVPAGHSSYRRLQVQKTFLLHGGGELGAEPRRERASWDIKHRPVFFTELHTV 202
R D REG + +G+ ++LQ + + E A P WD K++ F+T L T
Sbjct: 386 RIRDWREGALDSGYL-VKKLQEAEEHIKEY--EESASPPGWSCHWDRKYKQYFYTNLETK 442
Query: 201 SS 196
S
Sbjct: 443 KS 444
>SB_12645| Best HMM Match : Laminin_EGF (HMM E-Value=3e-31)
Length = 541
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 254 PRGISSTAQFSSRNCTRSPRPRAGSTADR*RHSDAELVPRH 132
PRG+ T+ F+ R C P+ G D + D E PR+
Sbjct: 470 PRGVDKTSPFACRACNCDPQYTTGRCYD--ENGDCECKPRY 508
>SB_28757| Best HMM Match : DUF1014 (HMM E-Value=4.9)
Length = 434
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 188 AGSTADR*RHSDAELVPRHVCYLQQHVNLR 99
AG D +H AEL PR+VC Q H N++
Sbjct: 123 AGLPPDAKKHKRAEL-PRNVCLCQYHENIK 151
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 347 PVTRAIGASKCRKHSSCTVAASSAPNPDVSGPRG 246
P A G S CR+H++C + + + G RG
Sbjct: 3445 PTAEATGCSPCRRHNACRSGPKAHTSYSMYGRRG 3478
>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
Length = 1702
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 188 AGSTADR*RHSDAELVPRHVCYLQQHVNLR 99
AG D +H AEL PR+VC Q H N++
Sbjct: 116 AGLPHDAKKHKRAEL-PRNVCLCQYHENIK 144
>SB_32768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 215 NCTRSPRPRAGSTADR*RHSDAELVPRHVCYLQQHVNLRAPAHQ 84
N RSP RAGST DR R S+++ + + + + L AH+
Sbjct: 860 NGFRSPSERAGSTRDR-RRSESDKLQPDIPMDYRDITLNRGAHE 902
>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
Length = 1213
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 296 TVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGSTA 174
T A + N + S P+G+ + SR TR+P TA
Sbjct: 275 TPIADDSSNNETSEPKGLGTNETKGSRRSTRNPNQSPAETA 315
>SB_30900| Best HMM Match : Extensin_2 (HMM E-Value=0.17)
Length = 473
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = -2
Query: 311 KHSSCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAG-STADR*RHSDAELVP 138
+H C A S P P + P I++ + P P G +TAD H LVP
Sbjct: 53 RHHHCRHPAPSLPAPSLPAPGTITADTWYHHCRHLVPPLPTPGTTTADTWYHHCRHLVP 111
>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
Length = 358
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +1
Query: 238 LDIPRGPLTSGFGAELAATVQEECFLHLEAPIARVTGWDAPFPHVFE 378
LD+P + GA LA V E F I +GW P HV+E
Sbjct: 120 LDLPEVSVL--MGANLAKEVARELFGEATIGIVFFSGWIEPALHVYE 164
>SB_37303| Best HMM Match : Spc97_Spc98 (HMM E-Value=0)
Length = 661
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 322 EAPIARVTGWDAPFPHVFEPF 384
+ P+A +TGW P P + E F
Sbjct: 599 QLPVAGLTGWSIPSPGIMESF 619
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 427 VVSRLGSSATCPVSRKVRRHAGRARPSRSLELSAPPS 317
+ S+ GSS T P S K R + R P S + PPS
Sbjct: 811 ISSKSGSSITTPQSDKDRANCTRYIPKCSSSATTPPS 847
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -2
Query: 347 PVTRAIGASKCRKHSSCTVAASSAPNPDVSG----PRGISSTAQFSSRNCTRSPRPRAGS 180
PV+ S H SC+ +S + N ++ + ISS ++ R +RS + A
Sbjct: 637 PVSSTSHVSISNFHDSCSEDSSESDNSSMTRHADIEKSISSCSEIGKRKKSRSSKQSASP 696
Query: 179 TADR*RHSDAELVPRHVCYL 120
A + +S + CYL
Sbjct: 697 RAKKQDYSTSSEESEPPCYL 716
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -2
Query: 302 SCTVAASSAPNPDVSGPRGISSTAQFSSRNCTRSPRPRAGS 180
S + + S +P+P G R SS+ SSR+ +RSPR R S
Sbjct: 1114 SLSKSVSKSPSPARKGKRSSSSS---SSRSRSRSPRRRKRS 1151
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 27.1 bits (57), Expect = 9.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -2
Query: 245 ISSTAQFSSRNCTRSPRPRAGSTADR*RHSDAELVPRHVCYLQQHVNLR 99
I STA SS + SPR AGS+ H + R V + + H+ LR
Sbjct: 302 IESTANQSSSSSQHSPRSAAGSSIHLHPHL-TSVKQREVAWSKSHLVLR 349
>SB_13481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +3
Query: 72 AAATL-VGWGTQVHVLLEV-ADMARDKLGVTVTSSICSRSCPGTRRPCAIP 218
+ AT+ VG GT + + + ++ R+ +G T+ +C R PG +P
Sbjct: 24 STATIPVGRGTAIPTCISITSNSLREMIGTCSTTFLCPRYSPGASSSSRVP 74
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 81 TLVGWGTQVHVLLEVADMARDKLG 152
TL+GW H ++EVA +K+G
Sbjct: 506 TLIGWSLTTHKVIEVAVGKEEKIG 529
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,959
Number of Sequences: 59808
Number of extensions: 269215
Number of successful extensions: 780
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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