Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0823
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.92 
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.1  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   3.7  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   8.6  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   8.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 237 SPRPSVATGLAPSTGKRPRSRRTWTG 160
           +P P+   G  P     PRS+R +TG
Sbjct: 262 APSPTAGAGGLPPQVPSPRSQRRYTG 287


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 269 SQATRSKERPSRRDPPSLRAWHPLRE 192
           SQA  S++     DP ++  W P RE
Sbjct: 99  SQAPASQQSLDASDPDAMGKWCPRRE 124


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 269 SQATRSKERPSRRDPPSLRAWHPLRE 192
           SQA  S++     DP ++  W P RE
Sbjct: 255 SQAPASQQSLDASDPDAMGKWCPRRE 280


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 20/77 (25%), Positives = 25/77 (32%)
 Frame = -2

Query: 262 QPDLRSVPLAATLRRYGPGTLYGKTAPFKTNLDRSRRDEKAEPPEHHISRYRLKQRDSVL 83
           QP     P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L
Sbjct: 61  QPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIML 120

Query: 82  GYIPVRSPLLRKSWLVS 32
             I   +     +W  +
Sbjct: 121 AIITKMTLTQVSTWFAN 137


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 204 PSTGKRPRSRR 172
           PS+G+ PR+RR
Sbjct: 203 PSSGRSPRTRR 213


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 397 RFHVLLNSLFKVLFNFPSRYLF 332
           R  V+L  L  +LF+ P+ +LF
Sbjct: 162 RVLVMLAWLLSILFSLPTVFLF 183


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 403 G*TCETRMNERRDSSFSLGRTFTCVQMLTE 492
           G  CE  +NE   +  S   T  CVQ++ +
Sbjct: 292 GPRCEGDINECLSNPCSNAGTLDCVQLVND 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,313
Number of Sequences: 336
Number of extensions: 2668
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)