Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0823
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   3.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   5.2  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   6.9  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    25   6.9  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.1  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 291 KLHLRLNMTARPIANKYREGKLKRTLKREFKST*NRSGVNLRN 419
           +++L+  + +  I NK     LK +LK E+K T + + V LRN
Sbjct: 223 EVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVELRN 265


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 457 GRTFTCVQMLTERSFRASFSVGTVRERLTSREDVHFSLSNASRPVRR 597
           G+T   +Q+   R     +S+G V   + +RED  F + N + P  R
Sbjct: 98  GKTALLLQLC--RLLGEKYSIGVVTNDIFTREDQEFLIRNKALPEER 142


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 219 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 112
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 585 SRCITKREVHVFSGR*TFTYRADGERRTK 499
           SRC+T  E+H      +F Y+   E + K
Sbjct: 190 SRCLTVEELHTLMNSFSFIYKLPEEEKEK 218


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 290 TTRLGLHSQATRSKERPSRRDPPSLRAWHPLRENGP 183
           T R  + +    S+     R+P S RA  P R+N P
Sbjct: 150 TQRTSITNDPQSSQSSSVSRNPASSRAGSPTRDNAP 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,883
Number of Sequences: 5004
Number of extensions: 46902
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)