Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0823
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554     33   0.19 
03_03_0249 + 15832086-15833261                                         31   1.0  
04_04_0720 - 27543998-27544230,27544339-27544432,27544571-275448...    29   4.1  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   4.1  
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998     28   7.1  
10_05_0055 - 8625420-8625737,8625835-8625988,8626202-8626439,862...    27   9.4  
04_03_0200 - 12570414-12570712,12572704-12573007                       27   9.4  
04_01_0164 + 1858758-1858953,1859178-1859485                           27   9.4  
03_05_0862 + 28353235-28354431                                         27   9.4  

>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
          Length = 449

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -3

Query: 288 HPLRAALSSNPI*GASLSPRPSVATGLAPSTGKRP 184
           HP+  A SS+PI   SL P PSVAT +A      P
Sbjct: 31  HPIFGAASSSPIAHRSLLPTPSVATAVAVQVDPPP 65


>03_03_0249 + 15832086-15833261
          Length = 391

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 285 PLRAALSSNPI*GASLSPRPSVAT-GLAPSTGKRPRSRRTWTGVVATRKR 139
           PLR  LS+ P+   + SP PS A   L  +TGK PR    WT   A   R
Sbjct: 207 PLRRQLSA-PMPPPAPSPAPSTARRSLDSATGKAPRWIEFWTDAAAAGDR 255


>04_04_0720 -
           27543998-27544230,27544339-27544432,27544571-27544898,
           27545387-27545850
          Length = 372

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = -3

Query: 297 GVYHPLRAALSSNPI*GASLSPRPSVATGLAPSTGKRPRSRR 172
           G  H +R A SS+   GA+LSP  S+++G  P+T    R+ R
Sbjct: 35  GGKHLVRLAGSSSLRGGAALSPAVSISSGSRPATRAGARALR 76


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 49  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 144
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
          Length = 473

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -3

Query: 243 SLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 151
           +L  RPSV  G A +T + P SRR   GV A
Sbjct: 97  TLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127


>10_05_0055 -
           8625420-8625737,8625835-8625988,8626202-8626439,
           8626610-8626820,8626909-8627033,8627451-8627570,
           8627749-8628625
          Length = 680

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 270 LSSNPI*GASLSPRPSVATGLAPSTGKR 187
           L+++P  G+S SP PS +  L P  GKR
Sbjct: 268 LAASPSPGSSSSPLPSPSPSLPPLEGKR 295


>04_03_0200 - 12570414-12570712,12572704-12573007
          Length = 200

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 249 GASLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 136
           G   + RPS   G+A S+G + RS + W     T K N
Sbjct: 109 GVEQAARPSCNAGIASSSGGKKRS-KAWEDFDITEKEN 145


>04_01_0164 + 1858758-1858953,1859178-1859485
          Length = 167

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -3

Query: 339 TCSLSVSRSYLALDGVYHPLRAALSSNPI*GASLSPRPSVATGLAPSTGKRPRSRRTWTG 160
           T  L+ SR +  + G    +R   S     G S   R S ATG    +     +   WTG
Sbjct: 75  TVILAASRMWYEVGGKAWSIRVEDSE----GGSSPSRRSAATGSILRSHLHKAAMTKWTG 130

Query: 159 VVATRKR 139
           V +TR R
Sbjct: 131 VTSTRPR 137


>03_05_0862 + 28353235-28354431
          Length = 398

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 143 FLVATTPVQVRLERGRFPVEGARPVATEGRGE 238
           FLV + P      RG   VE  RPVA  G GE
Sbjct: 262 FLVESPPGSAGGRRGLMQVELLRPVAASGGGE 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,192,017
Number of Sequences: 37544
Number of extensions: 331133
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)