Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0823
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.81 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   7.6  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   7.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 122 HLPLSIKTTGFSAGLYSCSLAATKE 48
           H PLS+K  G   GL    LA T +
Sbjct: 319 HTPLSVKFPGMGHGLQPPDLAGTSQ 343


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 496 SFRASFSVGTVRERLTSREDVHFSL--SNASRPVRRGFKTI 612
           +FRA  + GT+ ++L  +E+  F L  ++  RP    FK +
Sbjct: 251 NFRAGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGV 291


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 496 SFRASFSVGTVRERLTSREDVHFSL--SNASRPVRRGFKTI 612
           +FRA  + GT+ ++L  +E+  F L  ++  RP    FK +
Sbjct: 166 NFRAGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGV 206


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 496 SFRASFSVGTVRERLTSREDVHFSL--SNASRPVRRGFKTI 612
           +FRA  + GT+ ++L  +E+  F L  ++  RP    FK +
Sbjct: 485 NFRAGPTPGTILKKLCPQEEACFRLLMNDILRPYVPEFKGV 525


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 116 PLSIKTTGFSAGLYSCSLAATKE 48
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 116 PLSIKTTGFSAGLYSCSLAATKE 48
           P    TTGFS   Y C  +  KE
Sbjct: 79  PSVASTTGFSKECYCCRESYLKE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,850
Number of Sequences: 438
Number of extensions: 3550
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)