Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0823
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23790.1 68416.m02990 AMP-binding protein, putative similar t...    29   2.6  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   4.5  
At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferas...    28   4.5  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    28   6.0  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   7.9  

>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
           AMP-binding protein GB:CAA96521 from [Brassica napus]
           (Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-CoA synthetase-like protein  GI:20799732
          Length = 722

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 585 SRCITKREVHVFSGR*TFTYRADGERRTKRTFRQHLNARKRTPERKR*ISPFV 427
           S C +  E  V   R  F Y+A G R ++R FR    ++ +  E +R  SPF+
Sbjct: 13  SHCSSAPEFQVSGMRLVFGYKAFGCRTSRRGFRVRCESKIQEKELRR-CSPFL 64


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 237 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 106
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At2g11000.1 68415.m01176 natC N(alpha)-terminal acetyltransferase,
           Mak10 subunit family protein contains Pfam PF04112:
           Mak10 subunit, NatC N(alpha)-terminal acetyltransferase;
           similar to corneal wound healing related protein
           (GI:8926320) [Rattus norvegicus]; weak similarity to
           Glucose repressible protein MAK10 (Swiss-Prot:Q02197)
           [Saccharomyces cerevisiae]
          Length = 695

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = -1

Query: 608 VLNPRRTGRDALLREKCTSSRDVKRSRTVPTENDARNERSVNI*THVNVRPRENDESLRS 429
           VL P RT   ALL   C   R   R+  V   +DAR     ++ T     P   +E  + 
Sbjct: 139 VLRPERTSSQALLHSYCRVIRATCRA-VVSVVSDARTNEEEDLFTMTYGLPFSGEEDAKG 197

Query: 428 FIRVSQV 408
            + ++ V
Sbjct: 198 LLLLNAV 204


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -1

Query: 596 RRTGRDALLREKCTSSRDVKRSRTVPTENDARNERSVNI*THV-----NVRPRENDE 441
           +R  R A  REK +  +  K+ R      D R E  V+  TH      N    +NDE
Sbjct: 412 QRAKRGAAEREKKSKKKQAKQKRNKNKGKDKRKEEKVSFATHAKDLEENQNQNQNDE 468


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 116 PLSIKTTGFSAGLYSCSLAATKEIL 42
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,663,033
Number of Sequences: 28952
Number of extensions: 252113
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)