Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0822
(547 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 41 6e-04
SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.009
SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26) 29 2.5
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041) 29 3.3
SB_23657| Best HMM Match : Sushi (HMM E-Value=0) 28 5.7
SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69) 27 7.6
SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28) 27 7.6
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/29 (68%), Positives = 21/29 (72%)
Frame = -2
Query: 243 NRYGPPSGFPLTST*PGIVHHLSGPSICA 157
NRY PP FPL S GIVHHLSGP+ CA
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCA 29
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = -1
Query: 244 ESLRSSIRVSPDFDLTRHSSPSFGSQHLCS 155
ESLR+S RVS F L RHSSPSFGSQ + S
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = -1
Query: 541 FGSSHSASSAYKIGPLGTVIRSPASSFE*AGVLTHLKFENR 419
FGSS ASS Y+ GP T I P + + G+LT+LKFENR
Sbjct: 78 FGSSRIASSGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFENR 117
>SB_6844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 37.1 bits (82), Expect = 0.009
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1
Query: 541 FGSSHSASSAYKIGPLGTVIRSPAS 467
FGSS ASSAY+ GPLGT I PAS
Sbjct: 21 FGSSRIASSAYQNGPLGTRIHCPAS 45
>SB_44604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = -2
Query: 243 NRYGPPSGFPLTST*PGIVHH 181
NRY PP FPL S GIVHH
Sbjct: 1 NRYEPPPEFPLASPYSGIVHH 21
>SB_19053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -3
Query: 509 QNWPTWHRHQISGFIVRVSRSSHPFKV 429
Q WPT + H +SGF SR+S+ FKV
Sbjct: 32 QKWPTRNSHSLSGFNY-ASRTSYQFKV 57
>SB_1848| Best HMM Match : Galactosyl_T (HMM E-Value=1.4e-26)
Length = 308
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 163 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 267
NA RK + + W P WRTV ++ N + E
Sbjct: 75 NAARRKEIRFTWGTDFLPSPRWRTVFLIGANDNQE 109
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 163 NAGTRKMVNYAWSGRSQGKP*WRTVAILTCNRSSE 267
NA RK + + W P WRTV ++ N + E
Sbjct: 79 NAARRKEIRFTWGTDFLPTPRWRTVFLIGANDNQE 113
>SB_36629| Best HMM Match : Fer2 (HMM E-Value=0.0041)
Length = 128
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +3
Query: 111 LPRRLVSNQ*MKARSEHKC----WDPKDGELCLVRSKSGETLMEDRSDSDV 251
L RR VSN + +++H+ + +DG+ V++K G++L++ D+DV
Sbjct: 29 LARRYVSNGKEQTKAKHETVSITFVDRDGDRQTVKAKVGDSLLDVAKDNDV 79
>SB_23657| Best HMM Match : Sushi (HMM E-Value=0)
Length = 331
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +3
Query: 144 KARSEHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQSIVGTGYRGERLIEPSSSWFRPK 323
K + + +CW PK V SKSG+ + +Q GT G + + P
Sbjct: 210 KPKCKRRCWVPKPPLRGQVLSKSGKDYAKHGEHLRIQCNSGTDAVGPSQSQCKDGRWSPN 269
Query: 324 FP 329
FP
Sbjct: 270 FP 271
>SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
Length = 472
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 292 ISLSPLYPVPTIDCTS--ESLRSSIRVSPDFDLTRHSSPSFGSQHLCSERAFIH 137
I L P+ PVPT CT + L S + +P+ ++ + P + H ++H
Sbjct: 68 IPLYPVPPVPTFHCTQCPQYLHSIVPSTPNTYISLYPVPQVPTFHCTQYPQYLH 121
>SB_6393| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-28)
Length = 307
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 189 VHHLSGPSICAQSAPSFTDWKRDASGVRKSR 97
V L+ S+C Q APSF + K+ AS VR ++
Sbjct: 183 VRKLAKISLCDQYAPSFKEKKKMASEVRVAK 213
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,479
Number of Sequences: 59808
Number of extensions: 357071
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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