Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0818
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    25   0.37 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.5  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.5  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 123 NPHIYHLASLLRLF*VPEQLLTTVRRPPWH*ARAPES 13
           NP I  L + +  + VPE  ++T  RP W  AR P +
Sbjct: 384 NPLINILYANMNSYSVPEPTISTTPRPEW--ARPPST 418


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 143 PGIYVIPIRISIILRAYSDYFRCQSSY*P 57
           P +Y+IP+ + +I   + + F  ++SY P
Sbjct: 8   PTLYLIPVSVILISVGWWENFVSETSYLP 36


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 143 PGIYVIPIRISIILRAYSDYFRCQSSY*P 57
           P +Y+IP+ + +I   + + F  ++SY P
Sbjct: 241 PTLYLIPVSVILISVGWWENFVSETSYLP 269


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 143 PGIYVIPIRISIILRAYSDYFRCQSSY*P 57
           P +Y+IP+ + +I   + + F  ++SY P
Sbjct: 241 PTLYLIPVSVILISVGWWENFVSETSYLP 269


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +2

Query: 332 NCTAPGCCVPKCFAEKGNRGFPGSPGP 412
           +C    C +P CF        PG   P
Sbjct: 154 DCDPTQCVLPDCFCSADGTRIPGQLEP 180


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/27 (29%), Positives = 10/27 (37%)
 Frame = +2

Query: 332 NCTAPGCCVPKCFAEKGNRGFPGSPGP 412
           +C    C +P CF        PG   P
Sbjct: 161 DCDPTQCVLPDCFCSADGTRIPGQLEP 187


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/22 (31%), Positives = 9/22 (40%)
 Frame = +2

Query: 335 CTAPGCCVPKCFAEKGNRGFPG 400
           C    C +P CF  +     PG
Sbjct: 163 CDPAVCVLPDCFCSEDGTTIPG 184


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
 Frame = +3

Query: 123  WNNIYSRDLP---PTNWPREVAPDTERP 197
            WN   + + P   PT W   + P +E+P
Sbjct: 1358 WNPGSTTNYPEWQPTEWHPPIPPTSEKP 1385


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,074
Number of Sequences: 336
Number of extensions: 3395
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)