Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0818
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    29   0.69 
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    29   0.69 
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   1.6  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   8.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 18/41 (43%), Positives = 19/41 (46%)
 Frame = +3

Query: 105 DDRYADWNNIYSRDLPPTNWPREVAPDTERPYAVNQYGLYN 227
           +DRYADWN   S D P    PR      E P  V   G YN
Sbjct: 208 EDRYADWNFTNSWD-PDCELPRFWGESGE-PVVVEWTGCYN 246


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 84  IIGVSSQDDRYADWNNIYSRDLPPTNWPREVAP 182
           I+G+ +  DR  DWN+ Y+R +    W    AP
Sbjct: 254 IVGIEADPDR-PDWNDYYARRVQFCQWTIAAAP 285


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
 Frame = +3

Query: 114 YADWNNIYSRDLPPTNWPREVAP--DTERPYAVNQYGLYNRNDIP 242
           + DWN     + PP  W  E+ P  DT   Y V+    Y+    P
Sbjct: 245 FPDWNKFIFHEYPPKPW-SEILPSVDTSIQYIVSHLVTYSNRASP 288


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 368 FAEKGNRGFPGSPGPQGPRGLPG 436
           + E+G  G PG PG     G PG
Sbjct: 71  YGEEGLNGQPGGPGGGPGEGFPG 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,793
Number of Sequences: 5004
Number of extensions: 53227
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)