Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0818
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0187 + 32209924-32210634                                         34   0.075
03_06_0188 + 32212297-32212746                                         33   0.17 
05_01_0090 + 598311-599597,599884-599997,600186-600450,600994-60...    31   0.93 
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           29   2.1  
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           29   2.8  
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898...    29   2.8  
01_02_0031 + 10364487-10365407                                         29   3.7  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           28   5.0  
08_02_1624 - 28334067-28335851                                         27   8.7  
01_01_1192 + 9511961-9512977,9513860-9514078                           27   8.7  

>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 34.3 bits (75), Expect = 0.075
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 599 IPGLPWSPGDP*IPILPANP--FAPVLPLSPLDHVDP 495
           IPG+P  P  P +P LP NP    P +P  PL  V+P
Sbjct: 142 IPGVPTIPTVPGVPELPVNPGGVVPTIPKVPLPPVNP 178


>03_06_0188 + 32212297-32212746
          Length = 149

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 596 PGLPWSPGDP*IPIL-PANPFAPVLPLSPL 510
           PG+P  PG P +P++ P  PF PV+P  P+
Sbjct: 59  PGIPVIPGVPGVPVVGPGIPFVPVIPGVPV 88


>05_01_0090 +
           598311-599597,599884-599997,600186-600450,600994-601109
          Length = 593

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -1

Query: 591 STLVTRGSLNTHSTSKSFCSSFAFVTFRPRGPCGPI*PFCPLGPCAPSAPS 439
           ++++  G+L+  S+S    +SF+F T +PR   GP+  +C   P    A S
Sbjct: 87  ASVLNDGALSIGSSSFDSSNSFSFRTLQPRQYSGPL-EYCTTSPSTSGASS 136


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 478 RSNRSTGSTWSKGDKGKTGAKGFAGRMGIQGSPGDQGRPGI 600
           R N     ++  G  G  G  GF+   G  GSP  +G  G+
Sbjct: 435 RPNSGPPPSYGAGGYGPQGGSGFSESYGYSGSPSHRGNAGM 475


>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 523 GKTGAKGFAGRMGIQGSPGDQGR 591
           GKTG +G++ R  + G  GDQGR
Sbjct: 469 GKTGDQGWSNRHCVAGLTGDQGR 491


>03_02_0505 +
           8981856-8982879,8983014-8983129,8985407-8985994,
           8986091-8986192
          Length = 609

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 557 ILPANPFAPVLPLSPLDHVDPV 492
           +L A+P AP++ L  LDH++P+
Sbjct: 390 MLAAHPLAPLVSLHHLDHIEPI 411


>01_02_0031 + 10364487-10365407
          Length = 306

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -2

Query: 587 PWSPGDP*IPILPANPFAPVLPLS-PLDHVDPVDLFDLFAP*VLAHLQHLHGQEDHV 420
           P  P  P +P  P  P AP+LPL+ P  HV P        P     + H H Q   +
Sbjct: 170 PPPPPPPALPAPPPPP-APMLPLAPPPTHVTPAMPLSSMPPPAFHGMNHHHHQNHFI 225


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
 Frame = +2

Query: 281 AVYDPDTRQRTSTAINRNCTAP---GCCVPKCFAEKGNRGFPGSPGPQGPRGLPGH 439
           A + P    RT T + +  T     G   P C      R FPG  G   P  +PGH
Sbjct: 24  AAFVPVAESRT-TPVEKTTTTQAEDGVKKPDCVPAFDPRSFPGHGGTTTPTPIPGH 78


>08_02_1624 - 28334067-28335851
          Length = 594

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 293 PDTRQRTSTAINRNCTAPGCCVPKCFAEKGNRGFPG 400
           P T+Q       R C     C  +C  E+ NRG  G
Sbjct: 370 PTTQQLLKRQTQRGCHCAELCGSRCSCERKNRGADG 405


>01_01_1192 + 9511961-9512977,9513860-9514078
          Length = 411

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 487 RSTGSTWSKGDKGKTGAKGFAGRMGIQGSPGDQG 588
           RST   W K D G  G  G AGR       G+ G
Sbjct: 331 RSTTKQWLKSDDGLIGDDGMAGRSYPDHWKGENG 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,453,548
Number of Sequences: 37544
Number of extensions: 372371
Number of successful extensions: 1170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)