Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0818
(603 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64450.1 68414.m07306 proline-rich family protein contains pr... 37 0.012
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,... 32 0.25
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra... 31 0.44
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra... 31 0.44
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa... 31 0.59
At1g44222.1 68414.m05107 hypothetical protein 29 2.4
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 29 3.1
At3g02670.1 68416.m00258 proline-rich family protein contains pr... 29 3.1
At2g37730.1 68415.m04627 fringe-related protein similarity to pr... 29 3.1
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 28 4.1
At5g27650.1 68418.m03313 PWWP domain-containing protein hypothet... 28 4.1
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 28 5.5
At1g10620.1 68414.m01204 protein kinase family protein contains ... 27 7.2
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 9.6
>At1g64450.1 68414.m07306 proline-rich family protein contains
proline rich extensins, INTERPRO:IPR0002965
Length = 342
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 596 PGLPWSPGDP*IPILPANPFAPVLPLSP 513
PG P PG+P PI+P NP +P P++P
Sbjct: 199 PGSPEFPGNPGAPIIPRNPGSPEFPINP 226
Score = 34.7 bits (76), Expect = 0.048
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 602 GIPGLPWSPGDP*IPILPA-NPFAPVLPLSPLDHVDP 495
G P +P +PG P PI P NP APV+P +P V P
Sbjct: 209 GAPIIPRNPGSPEFPINPPRNPGAPVIPRNPNPPVFP 245
Score = 33.1 bits (72), Expect = 0.15
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -2
Query: 602 GIPGLPWSPGDP*IPILPANPFAPVLPLSP 513
G PG P P +P P P NP AP++P +P
Sbjct: 188 GNPGPPSFPRNPGSPEFPGNPGAPIIPRNP 217
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 602 GIPGLPWSPG-DP*IPILPANPFAPVLPLSP 513
G P P +P +P P++P NP PV P +P
Sbjct: 218 GSPEFPINPPRNPGAPVIPRNPNPPVFPGNP 248
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 602 GIPGLPWSPGDP*IPILPANPFAPVLPLSP 513
G PG P G+P P P NP +P P +P
Sbjct: 179 GNPGSPDFSGNPGPPSFPRNPGSPEFPGNP 208
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -2
Query: 599 IPGLPWSPGDP*IPILPANPFAPVLPLSP 513
IP P PG P + P NP +P P P
Sbjct: 144 IPDSPIIPGPPDFTVTPRNPDSPYFPGYP 172
>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
putative / protein phosphatase 2A 62 kDa B'' regulatory
subunit, putative contains Pfam profile: PF00036 EF
hand; identical to cDNA protein phosphatase 2A 62 kDa
B'' regulatory subunit GI:5533378
Length = 538
Score = 32.3 bits (70), Expect = 0.25
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Frame = +2
Query: 260 PELGQNFAVYDPDTRQRTSTAINRNCT----APGCCVPKCFAEKGN-----RGFPGSP 406
PE G+ DT+ T ++++NCT A G +P F G RG PGSP
Sbjct: 45 PETGRLVKSLIDDTKSSTPVSVSKNCTSLNVACGSALPSVFLNSGTPPLSPRGSPGSP 102
>At2g37410.2 68415.m04588 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 517 DKGKTGAKGFAGRMGIQGSPGDQGRPGI 600
D G G G G G+ G PG QG PG+
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGM 174
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 532 GAKGFAGRMGIQGSPGDQGRPGIP 603
G +G G G+QG PG G G+P
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMP 172
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 511 KGDKGKTGAKGFAGRMGIQGSPGDQG 588
+G G G +G G G+QG PG QG
Sbjct: 151 QGMPGMQGMQGMPGMPGMQGMPGMQG 176
>At2g37410.1 68415.m04587 mitochondrial import inner membrane
translocase (TIM17) nearly identical to SP|Q9SP35
Mitochondrial import inner membrane translocase subunit
TIM17 {Arabidopsis thaliana}
Length = 243
Score = 31.5 bits (68), Expect = 0.44
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 517 DKGKTGAKGFAGRMGIQGSPGDQGRPGI 600
D G G G G G+ G PG QG PG+
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQGMPGM 174
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 532 GAKGFAGRMGIQGSPGDQGRPGIP 603
G +G G G+QG PG G G+P
Sbjct: 149 GMQGMPGMQGMQGMPGMPGMQGMP 172
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 511 KGDKGKTGAKGFAGRMGIQGSPGDQG 588
+G G G +G G G+QG PG QG
Sbjct: 151 QGMPGMQGMQGMPGMPGMQGMPGMQG 176
>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
family protein contains Pfam profile PF01190: Pollen
proteins Ole e I family
Length = 401
Score = 31.1 bits (67), Expect = 0.59
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 599 IPGLPWSPGDP*IPILPANPFAPVLPLSP 513
+P +P PG P +P++P P AP++P P
Sbjct: 361 LPPVPGLPGIPPVPLIPGIPPAPLIPGIP 389
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 596 PGLPWSPGDP*IPILPANPFAPVLPLSP 513
P +P P P IP++P P P +PL P
Sbjct: 290 PLIPSPPSLPPIPLIPTPPTLPTIPLLP 317
>At1g44222.1 68414.m05107 hypothetical protein
Length = 85
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 496 GSTWSKGDKGKTGAKGFAGRMGIQGSPGDQGRPGI 600
GS G G G G GR+GI G G G PG+
Sbjct: 12 GSPGMLGILGMFGISGMVGRLGILGRLGMMGIPGM 46
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -2
Query: 596 PGLPWSPGDP*IPILPANPF-APVLPLSPLDHVDPV 492
P P SPG PI+P+ PF P P SP + PV
Sbjct: 567 PPTPISPGQNSPPIIPSPPFTGPSPPSSPSPPLPPV 602
>At3g02670.1 68416.m00258 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 217
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 341 APGCCVPKCFAEK--GNRGFPGSPGPQGPRGLPG 436
+PG +P F GN G PG PG G G+PG
Sbjct: 94 SPGFRLPFPFPSSPGGNPGIPGIPGIPGLPGIPG 127
Score = 27.9 bits (59), Expect = 5.5
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Frame = +2
Query: 248 IKTEPELGQNFA-VYDPDTRQRTSTAINRNCTAPGCCVPKCFAEK--GNRGFPGSPG--- 409
+ T N A V DP + ++S + +PG +P F GN G PGSPG
Sbjct: 40 VTTTTNEANNLAFVSDPFSSLQSSPPTSPIPGSPGFRLPFPFPSSPGGNPGIPGSPGFRL 99
Query: 410 ----PQGPRGLPG 436
P P G PG
Sbjct: 100 PFPFPSSPGGNPG 112
>At2g37730.1 68415.m04627 fringe-related protein similarity to
predicted proteins + similar to hypothetical protein
GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 532
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 557 ILPANPFAPVLPLSPLDHVDPV 492
+L A+P AP++ L LD+VDP+
Sbjct: 305 LLAAHPVAPLVTLHHLDYVDPI 326
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = -2
Query: 557 ILPANPFAPVLPLSPLDHVDPVDLFDLFAP*VLAHLQHLHGQEDHVGLVVQVSREILCYP 378
+L A+P AP++ L LD V+P+ ++ L HLQ + + D GL+ ++ +CY
Sbjct: 320 LLAAHPVAPLVTLHHLDVVEPI-FPNMTRVDALKHLQ-VPAKLDSAGLM----QQSICYD 373
Query: 377 SQR 369
+R
Sbjct: 374 KRR 376
>At5g27650.1 68418.m03313 PWWP domain-containing protein hypothetical
protein F22F7.12 - Arabidopsis thaliana, EMBL:AC009606
Length = 1072
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 590 LPWSPGDP*IPILPANPFAPVLPLSPLDHVDP 495
LP S P +P+ P LP+ P+DHV+P
Sbjct: 991 LPPSTLPPILPLPPQYTKPQQLPIKPVDHVEP 1022
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 514 GDKGKTGAKGFAGRMGIQGSPGDQGR 591
GD+G G +GF GR G +G P +GR
Sbjct: 10 GDRGDFG-RGFGGRGGGRGGPRGRGR 34
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 560 PILPANPFAPVLPLSPLD 507
P+LP NP +P PL PLD
Sbjct: 187 PMLPLNPNSPGNPLQPLD 204
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 380 GNRGFPGSPGPQGP 421
G GFPG+PGPQ P
Sbjct: 449 GYGGFPGAPGPQFP 462
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,408
Number of Sequences: 28952
Number of extensions: 287888
Number of successful extensions: 844
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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