Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0817
         (591 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    26   0.21 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   7.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   7.8  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   7.8  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.2 bits (55), Expect = 0.21
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 101 STWMISSVSTPTKTKLNLFLTSGRSLTPRTIPFGM 205
           S W I    +P   +   FL +GRS T + +PFG+
Sbjct: 399 SYWQIPL--SPESRQYTAFLYNGRSYTYQVLPFGL 431


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 331 SSPNRQTDAKACLRILSNLWNIPVISYS 248
           S PN    + AC   LS+ W+  + S+S
Sbjct: 22  SGPNATLQSSACTDDLSSCWSEDMGSFS 49


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 370 PRHTHTPEMVELLSSPNRQTDAKACLRILSNLWNI 266
           PR    P++V     P RQ   K C R  +  +N+
Sbjct: 61  PRTPLQPKLVAGKLKPKRQFICKYCNRQFTKSYNL 95


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 319 RQTDAKACLRILSNLWNIPVISY 251
           R +  + CL ILS    +P+I Y
Sbjct: 313 RPSSLRFCLNILSIFTYVPMILY 335


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 319 RQTDAKACLRILSNLWNIPVISY 251
           R +  + CL ILS    +P+I Y
Sbjct: 38  RPSSLRFCLNILSIFTYVPMILY 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,797
Number of Sequences: 336
Number of extensions: 3116
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)